Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01221 ATGGCCCCCTCGGCCGAACACAACGCCGATTCCTCCACCGCCGACTCTCAGAGATCCTCTCCAACGCCGTTTCTCATCAAGACCTACGACCTCGTCGACGACCGTACCATAGACGACGTTATTTCCTGGAACGATACCGGAACAACCTTCATCGTCTGGAACCCTACCGTTTTTGCTAAGGATTTGCTTCCAAAATATTTCAAGCACAACAATTTCTCGAGCTTCGTTCGCCAACTCAACACTTATGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTTTATAACGATTGTTTTAAAAGAGGCGAGAAACGGCTTCTCTGTGATATTCAGCGACGGAAAATTGTTTCAGCATCTCCGTTGCCGTTGACTGCGATTTCGACGATGAAGAAGATCGTATCGCCGTCGAACTCAGGGGAGGAGCAGGTGATTTCATCGAACTCGTCGCCGTCGATTGCGCCAGCGGATCTTTTGGACGAGAACGAGAGGCTGAGAAAGGAGAACATGCAATTGAAGAAGGAACTAGATGCAATGAAATCGCTTTGCAACAAAATATTAAATCTTATGTCGAGTTATGGAAAATTCCAATCGGAAGAAAGAAAAGAGTGCTGTTCCACGGCGACGAAGACGCTTAATTTGCTGCCGGCGAAGCGGTGCAACGGTGAAGATGCAGCGGCGGAAGATAGAAATCCGAAGCTGTTTGGGGTGGCGATTGGTACGAAGCGAGCGAGAGGAGAAGGACGGTGTTTTGATGATGATACAGTGTTGAGCCTTCATCAACCGGTTCATGCGGACGTGAAATAA 804 0.4789 MAPSAEHNADSSTADSQRSSPTPFLIKTYDLVDDRTIDDVISWNDTGTTFIVWNPTVFAKDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFYNDCFKRGEKRLLCDIQRRKIVSASPLPLTAISTMKKIVSPSNSGEEQVISSNSSPSIAPADLLDENERLRKENMQLKKELDAMKSLCNKILNLMSSYGKFQSEERKECCSTATKTLNLLPAKRCNGEDAAAEDRNPKLFGVAIGTKRARGEGRCFDDDTVLSLHQPVHADVK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01221 267 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01221 267 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01221 267 Gene3D - 16 114 IPR036388 -
Car04g01221 267 MobiDBLite consensus disorder prediction 1 21 - -
Car04g01221 267 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 249 IPR027725 -
Car04g01221 267 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 8 249 - -
Car04g01221 267 Coils Coil 154 181 - -
Car04g01221 267 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01221 267 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01221 267 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01221 267 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g01221 267 SUPERFAMILY "Winged helix" DNA-binding domain 19 113 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01221 Car-Chr4 12492677 12494159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01221 14 247 HSF AT5G62020 54.331 6.40e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car04g01221 HSF_DNA-bind 6.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01221 K09419 - gmx:100780987 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01324 08 19953154 19955069 Car04g01221 04 12492677 12494159 PCT