Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01216 ATGGTTGACTCGACTCCCATTATCATCATATTCCTCCTTCACCACCATTTTACTGCAGAGGCACAGTCACCATTACAACCAGAGACACGTATCGGTTCATCAACACCAAATTTATGGGACGTGTCTTCAATAGGTGTTATTGTTGGAGCTCTTATTGCAACACTTCTCTTATTTTTCCTCTTGTTAATGTTCCTACGCCGCTTCACAACCTCAACATCAGAAAACAACACTCTGTCTGAGTCAAAATGTAAACCTGGCACTGGAATCACCCCTCAAATTCTCAAAACATTTCCGATTCTTTTGTACTCTTTTATCTTCAAGAATCTTAAAGAGTGTCCTCAACAATGTTCCGTCTGTCTCGGTGATTTCAACAACAATGACACACTTCGCGTTCTCCCTCAATGTAACCATGTTTTTCACCCTCCTTGTATTGATGCTTGGCTTTCTAACCATGTTACTTGCCCTGTTTGTCGTACCAACCTCAATAAACTTCATTCTCTACATTTTTCTATTTCCGTTGACACACAAACAGTTGGTGGGCATGGAAGTGAAATGGTATAA 561 0.4046 MVDSTPIIIIFLLHHHFTAEAQSPLQPETRIGSSTPNLWDVSSIGVIVGALIATLLLFFLLLMFLRRFTTSTSENNTLSESKCKPGTGITPQILKTFPILLYSFIFKNLKECPQQCSVCLGDFNNNDTLRVLPQCNHVFHPPCIDAWLSNHVTCPVCRTNLNKLHSLHFSISVDTQTVGGHGSEMV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01216 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 166 IPR013083 -
Car04g01216 186 PANTHER RING FINGER DOMAIN-CONTAINING 6 178 - -
Car04g01216 186 SMART ring_2 116 157 IPR001841 -
Car04g01216 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 178 - -
Car04g01216 186 Pfam Ring finger domain 115 158 IPR001841 -
Car04g01216 186 CDD RING-H2_PA-TM-RING 115 158 - -
Car04g01216 186 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Car04g01216 186 SUPERFAMILY RING/U-box 108 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01216 Car-Chr4 12449433 12450444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01216 6 163 Rapid Response to Elicitors AT3G05200 33.929 2.55e-25 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01216 K10664 - aprc:113871817 122.094