Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01209 ATGGGGTTCCAGCCACAAGAAAAGACAAAGCCAAAACATAGGAAAGGTTTATGGTCACCTGAAGAAGACCATAAACTCAGAAACTACATTCTTAAACATGGTCATGGATGCTGGAGCTCTGTTCCAATCAAAGCAGGTTTGCAAAGGAATGGAAAGAGCTGTAGACTAAGGTGGATTAACTATTTAAGGCCAGGGTTAAAGAGAGGGAAGTTCAGCAAACAAGaggaggagaccatccttactcttcaccacatgttaggaaacaaGTGGTCGCAAATAGCTCAACATTTATCTGGACGAACCGATAATGAAATAAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTAAGGAAATTGAAACTCATAAACAAATTCATTATGCTAGCTCAAGCTCAGACACCGTGCACTCTGCACCCTCTCTTCAAAAACTTGCAACTCAAGATCCACAAAATTATAACATCACCAAAGAGACTCATCAAAGCTCATTACCAAAATTGTTGTTTGCTGAATGGCTTTCGTTGGATCATGTACATGCTAGGAATACAAATTCAATTGACTCTATGGTCATAAGAAATGGATATGATCAAAATTCAGGTTTTCAAGAAGGTGCAATGCATGATGTGTCACAAGGACCATTCAATAGAGAATATCATAGTATTGTGACTAACATTTCAGCTTCTGAGATGTTCAATTCACAGCTTAAATTTGCAAACCAAATGGTGGGAAATGGATTCATTCATTGCATGCCTGAGGTTGATTTCAGTAGCAATTTCAACTTGAGCAATGATGCAATGTATACATGA 816 0.3578 MGFQPQEKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLSGRTDNEIKNYWHSYLKKRVAKAKEIETHKQIHYASSSSDTVHSAPSLQKLATQDPQNYNITKETHQSSLPKLLFAEWLSLDHVHARNTNSIDSMVIRNGYDQNSGFQEGAMHDVSQGPFNREYHSIVTNISASEMFNSQLKFANQMVGNGFIHCMPEVDFSSNFNLSNDAMYT 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01209 271 CDD SANT 18 62 IPR001005 -
Car04g01209 271 Gene3D - 69 140 - -
Car04g01209 271 Gene3D - 15 67 - -
Car04g01209 271 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Car04g01209 271 PANTHER MYB DOMAIN PROTEIN 55 1 154 - -
Car04g01209 271 PANTHER MYB DOMAIN PROTEIN 55 154 265 - -
Car04g01209 271 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car04g01209 271 SMART sant 14 64 IPR001005 -
Car04g01209 271 SMART sant 67 115 IPR001005 -
Car04g01209 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car04g01209 271 PANTHER MYB TRANSCRIPTION FACTOR 154 265 - -
Car04g01209 271 PANTHER MYB TRANSCRIPTION FACTOR 1 154 - -
Car04g01209 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Car04g01209 271 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Car04g01209 271 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Car04g01209 271 CDD SANT 70 113 IPR001005 -
Car04g01209 271 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01209 Car-Chr4 12388282 12391093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01209 7 200 MYB Transcription Factor Family AT5G52260 52.113 2.32e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g01209 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01209 K09422 - gmx:778167 446.432