Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01207 ATGGGTAAAGCACCATGTTGTGATAAACATGGTGTCAAAAGAGGAGCTTGGACTCCTGAAGAAGACCAAACCTTAGTTGACTATATCAACAACCATGGCCATGGAAGTTGGCGTACTCTCCCCAAACATGCAGGTCTCCTACGATGTGGTAAAAGTTGCAGGCTTCGATGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGACCATTTACTGATGAAGAAGAAAGTACTATTATTCAACTTcatgccatgcttggtaacagGTGGGCTGCTATAGCATCCCAACTACAAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGCGTCCTTCGGTCTTTAGAGGCAAAACGGCCATGTGTTATGGCTGATAGGATTGTCCAGACTAATTCTCCATCTACGCGCCACATGGTACAATGGGAAAGTGCAAGGGTTGAGGCAGAGGCAAGGTTGTCAATGGATTCCACATCACTTAATTCAGCTTCTACAACTAAAACATGCCCTGATTACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAGTCGTTTCGCAAGATCAAGGAAAAGGAAGGAGTAGTGTCTCAAAGCCAAGTCTCACAAGCATCGTCTTCAAAATTGGAGGATTCATGTTCAGATGTCTCATTGCAGGCAAAAAACACTGGAACACAGAGCCTGAAGGTGTCACCAAAGCTTGAAGGTATTGACATGATTCAGGAACAATCAACAAGTAGCTACAAACCAAAGCTTGAAGATGATAGAGCTTGGTCAGATTCAGGCAATTATGAATTTCTTGATTCTTCTGATTCTGCACTAAAGCATCTTCTACATATGCCTGATGATATAGGATTCTTGGGACAGACTGATAATTTCCTGAATCTCCTTGATGCCACCATGTAG 915 0.4186 MGKAPCCDKHGVKRGAWTPEEDQTLVDYINNHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTDEEESTIIQLHAMLGNRWAAIASQLQGRTDNEIKNYWNTHLKKRVLRSLEAKRPCVMADRIVQTNSPSTRHMVQWESARVEAEARLSMDSTSLNSASTTKTCPDYFLQLWHSEVGQSFRKIKEKEGVVSQSQVSQASSSKLEDSCSDVSLQAKNTGTQSLKVSPKLEGIDMIQEQSTSSYKPKLEDDRAWSDSGNYEFLDSSDSALKHLLHMPDDIGFLGQTDNFLNLLDATM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01207 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car04g01207 304 CDD SANT 69 112 IPR001005 -
Car04g01207 304 SMART sant 13 63 IPR001005 -
Car04g01207 304 SMART sant 66 114 IPR001005 -
Car04g01207 304 CDD SANT 16 61 IPR001005 -
Car04g01207 304 Gene3D - 69 116 - -
Car04g01207 304 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 293 - -
Car04g01207 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car04g01207 304 Gene3D - 14 66 - -
Car04g01207 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car04g01207 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car04g01207 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car04g01207 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car04g01207 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car04g01207 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01207 Car-Chr4 12372733 12374472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01207 1 290 MYB Transcription Factor Family AT3G61250 50.987 3.96e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g01207 Myb_DNA-binding 9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01207 K09422 - gmx:100807142 462.996