Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01185 ATGGCAGAATCTGAGGAAGAAAATCAAGAGTTTCTACCTAAAACAAAAACATCATCATTAGAGGAACATGGTTGTTGTGCTATGGATTTTGATTTGGATTTGGAAACTTCATGGCCTTTGGATCACATGTCCTTTGTCTCCAACCCTATGTCACCTTTTCAGTTTTCCACCATCTCTGACCAACCTTCATCTCCTCTATGGGCTTTTACTGATGGAGAAGATGATAAGCATGTTAAGCTTGCAGCTTCAGCTTTATCTGATTGCCACAAAATCTTCTCTTCTGATTCAAATTCAATAACCGAGAAGCCGGTGGAGAATGATGAAAACAAAAAACATTTACCACCTCTTGTGCCACCAATAGAAAATTTGAATGGATATTGTGCAATCAAGGAAAAGATGACACAAGCGCTCCGCTACTTCAAAGAGTGGACTGAACTGAATGTTTTGGCTCAGGTTTGGGCACCTGTGAGAAACGGAAATCGGTATATGCTTACAACTTCAGGTCAACCCTTCGTTCTTGATGATCCACATAGTAATGGACTCTGTCAGTATAGAACGGTCTCCTTGATGTACATGTTTTCTGTGGATGGAGAGAACGATGGAACTCTCGGACTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCCAATGTTCAGTACTATACTAGTAAAGAGTATCCACGCCGATATTATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTATTTGAAACTTCATTGCAGTCATGTATTGGTGTGCTAGAGTTAATAATGACTTCACCAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCTCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGACTATCCATACACTCAGATTTGCAATGAAGGGCGTCAAAACGCATTATCCGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTTGCACAAACATGGGTTCCATGTAGGCATAGGAGTATTTTGGCACATGGTGGTGGTTTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGTTGCATGGGACAAGTTTGCATGTCTACAACCGAGGTAGCATTATATATCATAGATCCTCATTTATGGGGATTCAGAGAGGCTTGTGTTGAGCACCACTTACAACAAGGTCAAGGTGTTGCTGGAAGAGCTTTTTTGTCACAAAACATGAGCTTCTGCACAAACATTACTCAATTTTGCAAAACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTTCGATTTGCTTGCGGAGCTCTCACACGGGAAACGACTATTATGTGTTAGAGTTTTTCCTGCCTCCTAATATTACAGAATTTCATGAACAGAAGACACTCTTGGGATCCATATTGGCAATAATGAAACAGCATTTTCAGAGTCTTAAGATTGCTGCAGGTGTTGAACTTGGCGAAGATGGTTCGATTGAAATTATTGAAGCAATGGATGAAAGTGTTCATATTAGGATTGAATCTATTCCAATTGTTCAATCTATTAAATCGCCACCAAGACCTGATGCCTCACCAAATATGGAGGAGGACAAGGTACCGCAGGATCCGTCAGATATTCAGGGTGAAAATATAGGTGGAAACATTGATCAGGTGTCCTTCTTAGGGAATAAAAACGTAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACCGAGAAATCAATTAGTCTTGAAGTTCTACAACGCTATTTCGCAGGGAGTCTCAAAGATGCTGCAAAGAGCCTTGGCGTTTGCCCTACGACAATGAAGCGCATATGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCAGTTCAAGGTGGCGAAGGAGCGTTTGATTTGAATTCTCTCAATACTAATCAACTTCCAATTGTTAGTTCTTTCCCTGAGCCTTCTACTCCAAATACGTCCAACCAGCAAGCCTCATTAAGCATTAGGCCGTCAGAGCCTCAGATAAAAGAGAATGGAATCGATGCGTCTAAAGTATCAGAAACAAACATAGAGGTTGTAATGGAAGATCAATTGCTTGGAGGTAGGAAACGAAGTCTTGGAAAAGAAGTGATTATTAATGATAAAGGCGTGCCTGTTCAGAAGGTTAGAGCTAGGAGCGGATCGAGCGGAGATAGCACAAATCCTATTTCTCATGACTCATGCCATGGTAGTCCACCAATTGAAAGTTCAACCATAAAAGAAATATTCATTCCGTCCAACAATGAGCAATGTGTTGCATTGAAGGGATCGCCAGAGTCGAGAGTGCAGCCAACTAATGGATTCAACTCTGCATCGGCTTACCGTATGCCCGACAATGTGATTGCAGAACTTGAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGTAGTTCAAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATATGGCACCAGAACCTTGTGGGACTAATCTTCCAGGTTCATCATACCTTGCTCCTAAACAGTGCATGGATACTATTAATACATCCACGACGCCTTTTGCAGCTAGGAAAGAAATGAAAACTGTGACTATTAAGGCAACTTATAGAGAAGATATCATAAGGTTTAGGGTCACTTTGACTTGTGGCATTGTGGAATTGAAAGAAGAAATTGCAAAAAGGTTGAAACTAGAAGTTGGTACATTTGATGTCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGACCTGCAGGAGTGCATTGATGTTACAAGATCATCAGGAGGAAGCAACATAATTCGGGTTTTGGTGCACGACATTACGTCGAATCTTGGAAGCGCCTATGAGAGTTCAGGGGAGTGA 2931 0.4128 MAESEEENQEFLPKTKTSSLEEHGCCAMDFDLDLETSWPLDHMSFVSNPMSPFQFSTISDQPSSPLWAFTDGEDDKHVKLAASALSDCHKIFSSDSNSITEKPVENDENKKHLPPLVPPIENLNGYCAIKEKMTQALRYFKEWTELNVLAQVWAPVRNGNRYMLTTSGQPFVLDDPHSNGLCQYRTVSLMYMFSVDGENDGTLGLPGRVFQQKLPEWSPNVQYYTSKEYPRRYYAQHYNVRGTLALPVFETSLQSCIGVLELIMTSPKINYAPEVEKICKALEAVNLRSSEILDYPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSILAHGGGLKKSCSSFDGSCMGQVCMSTTEVALYIIDPHLWGFREACVEHHLQQGQGVAGRAFLSQNMSFCTNITQFCKTDYPLVHYALMFGLTSCFSICLRSSHTGNDYYVLEFFLPPNITEFHEQKTLLGSILAIMKQHFQSLKIAAGVELGEDGSIEIIEAMDESVHIRIESIPIVQSIKSPPRPDASPNMEEDKVPQDPSDIQGENIGGNIDQVSFLGNKNVKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGGEGAFDLNSLNTNQLPIVSSFPEPSTPNTSNQQASLSIRPSEPQIKENGIDASKVSETNIEVVMEDQLLGGRKRSLGKEVIINDKGVPVQKVRARSGSSGDSTNPISHDSCHGSPPIESSTIKEIFIPSNNEQCVALKGSPESRVQPTNGFNSASAYRMPDNVIAELEEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDMAPEPCGTNLPGSSYLAPKQCMDTINTSTTPFAARKEMKTVTIKATYREDIIRFRVTLTCGIVELKEEIAKRLKLEVGTFDVKYLDDDHEWVLIACDADLQECIDVTRSSGGSNIIRVLVHDITSNLGSAYESSGE 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01185 976 ProSiteProfiles RWP-RK domain profile. 564 645 IPR003035 -
Car04g01185 976 Pfam RWP-RK domain 577 625 IPR003035 -
Car04g01185 976 PANTHER PROTEIN NLP8 3 975 IPR045012 GO:0003700
Car04g01185 976 MobiDBLite consensus disorder prediction 661 680 - -
Car04g01185 976 MobiDBLite consensus disorder prediction 731 756 - -
Car04g01185 976 MobiDBLite consensus disorder prediction 519 546 - -
Car04g01185 976 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 975 - -
Car04g01185 976 Gene3D - 877 960 - -
Car04g01185 976 SMART PB1_new 880 963 IPR000270 GO:0005515
Car04g01185 976 CDD PB1_NLP 881 962 IPR034891 -
Car04g01185 976 Pfam PB1 domain 880 962 IPR000270 GO:0005515
Car04g01185 976 SUPERFAMILY CAD & PB1 domains 877 966 - -
Car04g01185 976 ProSiteProfiles PB1 domain profile. 880 963 IPR000270 GO:0005515
Car04g01185 976 MobiDBLite consensus disorder prediction 736 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01185 Car-Chr4 12154275 12158835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01185 264 976 NLP Transcription Factor Family AT4G24020 53.542 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Car04g01185 PB1 2.8e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01185 - - gmx:100786118 1534.24