Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01181 ATGGGAGCAGATGCAGACAGACATAAGTTGGGCAAACTGTCGAGAAAAGCTATTTATGTACGTGAACAAGCATCGCTGTCCTGTAATATTTTGTTCATTTGCAAGGGAAACCTCACACGATCTAGGGTAGATAGTGAAGACACAATTGAAGAGACTGCCCCTGTATTGTTGATGCTTGACTCAGATAAGGAAGCGAAACAATCTCAAAAGGCTAAATCAAAATTAATTCCTGATGTATTGAAATATTTAGATTCTGGTGATATGGAAGAGACTAAAAAAGTCAATTCTCACAGTTCTTTAAATGCAGAGTGGTCCTTTAACAGTGTTACTGACAGGACAAAGTTGACAGATTTGCCTATTCATGAGAATGATGAAACATTACAAAACTGGCGTGCTAAGGAGATAAGTAGAAAAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGAAAGATGTACAACAAATGAAGAATCAGCGAGATAAAATAATGTGTGAGTTGCAGATGGTCCGAGACCAAAGTTCAGCTCTTAGAAACCAATTGTTTGAATCCAAGTGTACGGTAACCGAGTTGGAAGAGAAGATTATATCAGCTGTGGGCCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTAAGGACAGAGCATGCAAATGCAGTTAGGAAAGTTGAAGTGCTCAAAAAAATGGAAGAAGTGGATACTACATCCTCTTATGAGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGGTACGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGTCAGAGCCAATTGGAATTCCAGCATCAGGTAGAGGTTTTAAGTAGAGTAAGACATCCAAACCTGTTAACACTAATTGGAAGCTGTGCAGAATCTAAGTCACTTGTGTATGAATACCTTAACAATGGTAGCCTTGAAAGCCATCTTGCCTGCAAAGATAAGACTCCACTTCCATGGCAAATTCGAATATCCATTTCTACCAACATATGCTCTGCTCTAATCTTCCTTCACTCCAGCGAGCCTTGTATTGTCCATGGGAATTTGAAGCCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACTTGGGGATTCATTCTTTAGTCCAGCATAGTGTGGATTCAGCGGACAACACAAACCCAGTAGTATGTCACAACTCGCATAACTATTTGGCGTATGTGGATCCAGAGTATCTTGTCACTGGTAAATCTACACCAGAGTCAGATGTGTATTCATTCGGAATCATACTGTTACAACTTCTAACTGGAAGACCACTTTCGGGGCTAGTTAGAGATGTGAGATGTGCATTGGAAAAGGAAAATCTTAAAACTGTGCTGGACTCTTCAGCTGGTGAATGGCCACTTGATCAAACCAAACAACTTGCATATTTAGCACTGAGGTGTTGTGAGAAGAGTTGGCTGAACCGGCCAGATCTTGCGTCGGAAGTCTGGAGTATTCTTAAACCATTCAGAACTACTTGCATAGACAGGAGACAAGAGTTGACTTCTAAGAAGCTTCAACGCGCTCCTTCTCATTTTGTATGCCCCATTGTCCAGGAAGTTATGGAAGATCCATACATAGCGGCAGATGGGTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGAAAGTGGTCACAACACATCCCCTATGACAAACCTTAAGCTTGAACACACAAATTTGGTACCTAATTATGCACTACATAATGCCATTCAGGAATGGCAGCAACAGTGA 1833 0.407 MGADADRHKLGKLSRKAIYVREQASLSCNILFICKGNLTRSRVDSEDTIEETAPVLLMLDSDKEAKQSQKAKSKLIPDVLKYLDSGDMEETKKVNSHSSLNAEWSFNSVTDRTKLTDLPIHENDETLQNWRAKEISRKKEVEEQLAREKKDVQQMKNQRDKIMCELQMVRDQSSALRNQLFESKCTVTELEEKIISAVGLLISFKEKRDKLRTEHANAVRKVEVLKKMEEVDTTSSYEVEFPAFSFMEINEATHDFDQSWKIGEGRYGSVYKGLLRNMLVAIKMLPSYGCQSQLEFQHQVEVLSRVRHPNLLTLIGSCAESKSLVYEYLNNGSLESHLACKDKTPLPWQIRISISTNICSALIFLHSSEPCIVHGNLKPSKVLLDANFVAKLGDLGIHSLVQHSVDSADNTNPVVCHNSHNYLAYVDPEYLVTGKSTPESDVYSFGIILLQLLTGRPLSGLVRDVRCALEKENLKTVLDSSAGEWPLDQTKQLAYLALRCCEKSWLNRPDLASEVWSILKPFRTTCIDRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLESGHNTSPMTNLKLEHTNLVPNYALHNAIQEWQQQ 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01181 610 PANTHER OS02G0152300 PROTEIN 1 609 - -
Car04g01181 610 SUPERFAMILY RING/U-box 538 610 - -
Car04g01181 610 Gene3D Phosphorylase Kinase; domain 1 225 328 - -
Car04g01181 610 ProSitePatterns Protein kinases ATP-binding region signature. 262 283 IPR017441 GO:0005524
Car04g01181 610 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 1 609 - -
Car04g01181 610 Coils Coil 131 172 - -
Car04g01181 610 SMART Ubox_2 544 607 IPR003613 GO:0004842|GO:0016567
Car04g01181 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 541 610 IPR013083 -
Car04g01181 610 SUPERFAMILY Protein kinase-like (PK-like) 231 517 IPR011009 -
Car04g01181 610 Coils Coil 208 228 - -
Car04g01181 610 ProSiteProfiles Protein kinase domain profile. 256 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01181 610 Pfam Protein tyrosine and serine/threonine kinase 261 512 IPR001245 GO:0004672|GO:0006468
Car04g01181 610 ProSiteProfiles U-box domain profile. 540 610 IPR003613 GO:0004842|GO:0016567
Car04g01181 610 CDD RING-Ubox_WDSUB1_like 545 586 - -
Car04g01181 610 Pfam U-box domain 541 609 IPR003613 GO:0004842|GO:0016567
Car04g01181 610 Gene3D Transferase(Phosphotransferase) domain 1 329 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01181 Car-Chr4 12122943 12129389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01181 1 85 U-box Gene Family AT3G49060 40.000 2.81e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Car04g01181 PK_Tyr_Ser-Thr 2.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01181 - - mtr:MTR_1g100820 980.319