Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01180 ATGGTGAAAAAAATTGAGGGTAGTTTTGCCATTTTTGAATTTTTTTCGGGGTACAAGGCAAAGTGTGGGGGTCCAAGAGAAATTTTTCTTGCCTGTGATGCGCTGCTGTTTCTTGTTAGAAACGTTTTTCGCCCTACTACTTCTATAACAGGGTTCTCTCTTCTACGCCATTTTTTCGATCACTTTCGTTCTTCTCTTATTTTCTTCAATCTCTGCTGCCGCTTTCAATTCTTTTCGGATCCTCAGTTTATATCTCCCAAACCGATCTCTTCCTCGTTCTCGTCTCTCTGGAATCCTGAAAAGTTTATTGATGGGAATGATTCTTTGGACACCATAATCAGACAGGCAATTGGAAAAGAATCTTTGCTTTCCTTTCCTAGGACTGGTGACAGGCCAGGACAGTGGATTCAATTATTTCATGCTTTAGAACAGCAGCAAGCAGATGTTCAAGGGTGGCCTTTGTTCTCTCCTGCAAAGGTTCAGATATATAAGTGTGACAAGTGTTCCGGAGAGTTTTGCTCTCCTATTAATTATAGAAGGCATAAACGTATACACCGTCGATTGAAAAAGCTTGATAAGgactctaagaaaagTAGGGATCTTTTAGCTGCGTATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTGTCATTTAACAATGTGATGCTGGGGGAGGTTCCAGGGTCTTCAATTTTACAAGCTCTCCCAACTCTTAGAACACAACAAGGATTTTCTTCTCTTCCACAAAATTATCTCCGGGCTGGTTTTGCACTTTTGGATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAGAAATTGTTCGGTATTCTTGATGATTGCAGTGAAAAAACATTTTTATGTGGAACAGCAGCGTCAATGCATCGACACATTTTTGACGGAGAGTCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTAAAGGAGTGGCTCGCAGACAAGGAGGCTGAAGCATTGAGATGCCAGAAGCTGCTGGTGGAGGAGGAGGAAGCTGCACAGAGAAGACAAGCTGCGATTTTGGAAAGAAAACGTCAGAAAAAGCTTAGACAGAAAGAACAGAAAGCAAGGGAACGACTTGCAAATGACACAGAAATTAAAGGGAATATCAGCAGCACAGGAGACGATGTATCACAAGAGGAAGCAACTTCGGCTGCATGTGAGTTTGAAGCACATAGGGCGGATGTATCAGCAGATCATGCTTCTTCACTTCATGTAACTTATAACTGCCCAAACACCGATGAATATGTCGACGGGGATACACAATCAGGATATGATTGTGACACCGATCAGAATGTGGAACGGCAGACTTCACAAAGGGATGCACAGTCAGGTTATGATTGTGACATTGATCGGAGTTTAGAGAGACAGACACCACATGGACATAATCCTCGGCGAACAATGGCTGCTAGACGGCAAGGGTTGCCTAAGTCACAACGTACTATTGCCAATAGTTTGTATGCAAACCAGAACTCTCAAAAGTCGAAGTTTGGTGTCAGTCCAAAATATGGAACCAACCGTGATCAAAGAGCAGCTCCTATAGGTAATGGTGGTAAAGTTTGGAGCCGAAAGCCTAAACCAGAAACAGAAGCAGTGGTTATAAAAACCAGACTGGATAAAGAACCCGACAAAATTAAGAATCAAGAAGTTCTGATAGGATCTGTATTTGTTTCACTGGCCAATTGCAGTCAATCAGAGGGTAATCTTGTCACATCTCAAGCGAACGACGTAATAGAGAATTTGTCTGACCAAAATATTGCTCTGGAAAAGCCAATGAAACCTGACTCCGTTCAGGGAGGCAACAATCGGTCAAGAGTTAAGCTTTGGAGGCCGGTTAGCCAGCACGGAACTAAAAATCCACCACCACTTCAAAGTGTTGGGACGACAGAAGTTGATGTAGTTCATGGAAAAGATGATCAGAAGTTGTTCGTTCAACGTGTTAAAGTAAATTCAGAAAGCTCAGAAAGCTTTCGGTTGTCCAGCCTTACTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCAATTTCGTCGCATCACGTGGAGTTGGTTATTTCTCCTGATTCCGAACCTCGTGGATTCCAGCCAGTCCAGGATTGCGAACAAGCATCATGTCAGTCTTCTTCTAATATGGAGAGATGTAGCATTGTTGCAAATACAGAGAACTGGTTGCCGCCTGCATCATCCAGAGTTGCTAAATCCAAACCCAGAGCGAAGCCCGAGAAGGGAATCAAGATAAAATATGCTCAATTTGATTTGTCGCCAATTAATTTATTATCAGAGGTTCCAGTTTTACCGATGGTCTTCTGTCAGAAAATTGAAGCGATTATCTCTCGTGCGACCTTCCGCCGCCCCTTCCCCTTCGCACGAACAGAGTCAGACATGGATGCCACACTAAATACCCTATCCCAATCTCAATGGGATTTTAGCTGTGACTTGGAAGTGGATTTTGGTTCCGAAGAGAACGCTTCTATTGTATATGCTACCTTAGCCGTCGATAAGGAGTTGCAACCTGACAAAGTTAAGCGACTCATGACGGTGTCTGATGGAAAACTGTCGGTGCACTTTGAGGCAACAGAAGCCAGATTTCTTCGTGCATCATATAGTGCTTTTGTAGATGTCCTTACTCTAGCAACCAAAACAATTGAAGAATTTGGTCAAAGAATGAAGTTGTGA 2742 0.426 MVKKIEGSFAIFEFFSGYKAKCGGPREIFLACDALLFLVRNVFRPTTSITGFSLLRHFFDHFRSSLIFFNLCCRFQFFSDPQFISPKPISSSFSSLWNPEKFIDGNDSLDTIIRQAIGKESLLSFPRTGDRPGQWIQLFHALEQQQADVQGWPLFSPAKVQIYKCDKCSGEFCSPINYRRHKRIHRRLKKLDKDSKKSRDLLAAYWDKLSVEEAKEVVSFNNVMLGEVPGSSILQALPTLRTQQGFSSLPQNYLRAGFALLDIVQSRPSSFPISSQKLFGILDDCSEKTFLCGTAASMHRHIFDGESGKIGLEPKNLVACTSFLLEQKLVKEWLADKEAEALRCQKLLVEEEEAAQRRQAAILERKRQKKLRQKEQKARERLANDTEIKGNISSTGDDVSQEEATSAACEFEAHRADVSADHASSLHVTYNCPNTDEYVDGDTQSGYDCDTDQNVERQTSQRDAQSGYDCDIDRSLERQTPHGHNPRRTMAARRQGLPKSQRTIANSLYANQNSQKSKFGVSPKYGTNRDQRAAPIGNGGKVWSRKPKPETEAVVIKTRLDKEPDKIKNQEVLIGSVFVSLANCSQSEGNLVTSQANDVIENLSDQNIALEKPMKPDSVQGGNNRSRVKLWRPVSQHGTKNPPPLQSVGTTEVDVVHGKDDQKLFVQRVKVNSESSESFRLSSLTAKAFLAQRWKEAISSHHVELVISPDSEPRGFQPVQDCEQASCQSSSNMERCSIVANTENWLPPASSRVAKSKPRAKPEKGIKIKYAQFDLSPINLLSEVPVLPMVFCQKIEAIISRATFRRPFPFARTESDMDATLNTLSQSQWDFSCDLEVDFGSEENASIVYATLAVDKELQPDKVKRLMTVSDGKLSVHFEATEARFLRASYSAFVDVLTLATKTIEEFGQRMKL 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01180 913 MobiDBLite consensus disorder prediction 364 406 - -
Car04g01180 913 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 100 771 - -
Car04g01180 913 Pfam Transcription factor Pcc1 832 905 IPR015419 -
Car04g01180 913 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Car04g01180 913 MobiDBLite consensus disorder prediction 387 402 - -
Car04g01180 913 Gene3D - 822 912 - -
Car04g01180 913 MobiDBLite consensus disorder prediction 467 484 - -
Car04g01180 913 MobiDBLite consensus disorder prediction 364 386 - -
Car04g01180 913 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Car04g01180 913 MobiDBLite consensus disorder prediction 443 466 - -
Car04g01180 913 MobiDBLite consensus disorder prediction 443 496 - -
Car04g01180 913 MobiDBLite consensus disorder prediction 516 545 - -
Car04g01180 913 Coils Coil 360 385 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01180 104 770 C2H2 Transcription Factor Family AT4G25610 40.087 3.27e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g01180 Pcc1 2.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01180 - - cam:101491132 1283.86