Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01173 ATGTCGTTACCGGGGTACACCGGCGGTGGCGGAGCCTCAGATTTATACGGCGGTGCAGCTGGTTTTTCCGGCAGATCCATCACACTTCAATCcaacatgaacaacaacaacatcaacaacatcaacaacaataaTATTTCAATTTCAACTCCAGCCACTGCACACAACCTTAACCCTTTCTACAGAACCCAACAACAACAGCTTCCAACAATTTTTCTAGACCCTTCTTCTCAAATCCCACATCGCCAAACATCAACCCTCATTGGAAAACGAACCCTCGCTGAATATCAAACCCAAaacatcaacaatcttaaccttcacaatttcaatttcaacaatcctaacaacaacaacaacaacaacacaaacaCTGTTCTTTCAAACCTTTTACTTCGTTCTGTGAAACCTAGAAATTTCCAACAGGCTTCTCCTATGTCCCCACTTTCTCCAATGGATTTCTCAAATTCACCACCTGAATTCATCAACTCTAACGCTTTTTCTTCACCGCGTTTAGGTTTTCCTCTTCGTACCACAAACCCATTACCCATCAATAATTCCTTCACCCAAAACACGAATTTTCCGTTTCAAAGTTCCAATTTTTCGCAGATTCAGAACAGGGTAACGACAATTAGCCATGACTCAGATAAAAAGATGATGGATCATCGCTTAGTGGAGTTGGAAAAACAGCTTCTTGAAGACAATGATTATGAAGAAGGAGAAGACGCAGTGTCTGTAATTACCAACAACGAATGGTCTGAAACAATTCAGAATTTGATTAACCCGACCCAGAAACCCGTTTCATCTTCACCAACTTCTTCAACCACTTCGTTGAACTCATCTTCTTCCTCTGTTCTTTCTCCTTCTTCTAGTTGTTCGAAGCAATCGTTAATGGAAGCTGCTTCTGCGATTTCCGAAGGGAAAATGGAAACTGCATCGGAGATCCTCGCTCGTTTGGTTCAGAATCCGAACCCGATTTCAAATTCGGATCGTAGATTAACAGATTGCATGGTTTCAGCGCTGAAATCGAGAATTAACCACGTTGAAAATCCACCACAGGTGGTGGAACTGTTCAGCAAGGAACACGCTGAGTCAACTCAGCTTCTCTTCGATCACTCCCTCTGCTTTAAGGTTTCTTTCATGGCTGCCAACCTCGGAATCCTCGAAGCCGCATTTGAAGAAAAAAAAGAGAGCGTTAACAACGATATGAAGAAGATTTGTGTGGTGGATTTCGATATGGGTAATGGAAAACAATACGCGAGTCTTCTCCACGAACTTTACGTGCGTCTTAATGGAACTCCGGCGACGTTGAAGATCACGGCGGTGGCGGAAACCGGCGATGACGAGAGGTTGAAGACGGTGGGAGAGTTTTTGGGTCGACAAGCGGAGAGACTGAGAATCGGATTTGAATTCAAAGTGGTGAGTTTGAAACTTGCTGAGTTAACTCGTGACTCGTTGGGTTGTGACTCGGATGCGTTTCTTGCTGTGAATTTTGCGTTCAAGCTTTTCAGAATGCCAGATGAGAGCGTGTCAACGGAGAATCCACGCGACGAACTTCTTAGGCGCGTGAAGGCACTTGCGCCAGGTGTTGTAACGGTTCTGGAGCAAGAAATTAATACCAATACCGCGCCGTTTGTTGCACGTGTGGCTGAGTCGTGTTCTTATTACGGCGCGCTGTTTGATTCAATTGAGTCCACGATGGCGCGTGACAACACGGAGCGAGTCAAGATTGAAGAGGGTTTGAGTCGGAAGCTGGGTAACGCGGTTGCTTGTGAAGGTAGAGATCGCGTCGAACGGTGTGAGGTGTTTGGGAAGTGGCGTGCACGCATGAGTATGGCTGGGTTTAAATTGAACCCAGTGAGTCAGAAAGTGGCTGAGTCGATCAAAGCTCGGCTGGCTCCAGGAAGCCGAGTCACTGTGAATGAAGAAAACGGTGGAGTTAGCTTTGGGTGGATGGGAAGAACTCTCACCGTCGCATCTGCTTGGCGTTAA 1989 0.4369 MSLPGYTGGGGASDLYGGAAGFSGRSITLQSNMNNNNINNINNNNISISTPATAHNLNPFYRTQQQQLPTIFLDPSSQIPHRQTSTLIGKRTLAEYQTQNINNLNLHNFNFNNPNNNNNNNTNTVLSNLLLRSVKPRNFQQASPMSPLSPMDFSNSPPEFINSNAFSSPRLGFPLRTTNPLPINNSFTQNTNFPFQSSNFSQIQNRVTTISHDSDKKMMDHRLVELEKQLLEDNDYEEGEDAVSVITNNEWSETIQNLINPTQKPVSSSPTSSTTSLNSSSSSVLSPSSSCSKQSLMEAASAISEGKMETASEILARLVQNPNPISNSDRRLTDCMVSALKSRINHVENPPQVVELFSKEHAESTQLLFDHSLCFKVSFMAANLGILEAAFEEKKESVNNDMKKICVVDFDMGNGKQYASLLHELYVRLNGTPATLKITAVAETGDDERLKTVGEFLGRQAERLRIGFEFKVVSLKLAELTRDSLGCDSDAFLAVNFAFKLFRMPDESVSTENPRDELLRRVKALAPGVVTVLEQEINTNTAPFVARVAESCSYYGALFDSIESTMARDNTERVKIEEGLSRKLGNAVACEGRDRVERCEVFGKWRARMSMAGFKLNPVSQKVAESIKARLAPGSRVTVNEENGGVSFGWMGRTLTVASAWR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01173 662 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 82 661 IPR005202 -
Car04g01173 662 MobiDBLite consensus disorder prediction 260 290 - -
Car04g01173 662 Pfam GRAS domain family 293 662 IPR005202 -
Car04g01173 662 ProSiteProfiles GRAS family profile. 283 662 IPR005202 -
Car04g01173 662 PANTHER SCARECROW-LIKE PROTEIN 8 82 661 IPR030013 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01173 Car-Chr4 12013135 12015502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01173 63 662 GRAS Transcription Factor Family AT5G52510 48.195 4.84e-157 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Car04g01173 GRAS 9.3e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01173 - - aip:107644872 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01173 04 12013135 12015502 Car04g01173 04 12013135 12015502 ECH
Car08g01235 08 16682643 16684714 Car04g01173 04 12013135 12015502 PCT