Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01161 ATGGATGAGGATTGGGATTTGTTTGCCATAGTTAGAAGCTGCCAATCACCCACCAATACTACTACAAAAGAAAATCCATTTACAACCACCAATAAAACTACACAATCTTCAATTTCCTCTTCTAATTTCAAGGTAGAATTAGAATATGAGGCATTTTCCTTTCCCAATATAGTGCAACCTATAGCCAATGAGATTCAAGAGTTAAACCAATTATTCACATCTTTTAaccccaccaccacaaacaccactactactaccacTAGTGATAATGGTATCAATCCCAATTCCCCTAATAATATTGCAAGATCCATTGGACAACAACAACACCATCTTCCCTCTACCAATTGGCCTCCTTTTGTGCAAGAAACCcaacaattacaacaacaaaaacaagaaTTTCAAGTACTCCAAAACAATTCTTCCATTGTCTTCCCAAACACCCAACCTCAAACACCTAGATCAAGAAAAAGAAAAAGTCAACAAGGGAAAATGGTGTGTCACGTAACTGCAGATAACCTCTCAGCAGATTTATGGGCATGGCGTAAATATGGACAAAAACCCATCAAAGGTTCTCCATATCCAAGGAACTATTATAGATGTAGCAGTTCGAAAGGTTGTACAGCAAGAAAGCAAGTTGAAAGGAGCAACTCTGAAGCAGAAATGTTCATTGTAACATACACAGGAGACCACACACACCCCAGACCTACCCATAGGAACTCACTCGCCGGCAGTACCCGAACCAAGTCTCCGGCGATGCTTTTGTCCACTTCAACTTCTAGTCAATCCAACACCATAACTTCTCCTTCTTCCTCCTCTTCAGCTCCATACTCTTTGGTTGAAGAAGAAGAGGATATGGACATGGAAATTGAAACTGATGAAGAAGCTGATGATACCTAG 897 0.3735 MDEDWDLFAIVRSCQSPTNTTTKENPFTTTNKTTQSSISSSNFKVELEYEAFSFPNIVQPIANEIQELNQLFTSFNPTTTNTTTTTTSDNGINPNSPNNIARSIGQQQHHLPSTNWPPFVQETQQLQQQKQEFQVLQNNSSIVFPNTQPQTPRSRKRKSQQGKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCTARKQVERSNSEAEMFIVTYTGDHTHPRPTHRNSLAGSTRTKSPAMLLSTSTSSQSNTITSPSSSSSAPYSLVEEEEDMDMEIETDEEADDT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01161 298 MobiDBLite consensus disorder prediction 141 155 - -
Car04g01161 298 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 284 IPR044810 GO:0003700
Car04g01161 298 Gene3D WRKY domain 158 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car04g01161 298 MobiDBLite consensus disorder prediction 279 298 - -
Car04g01161 298 MobiDBLite consensus disorder prediction 237 277 - -
Car04g01161 298 SUPERFAMILY WRKY DNA-binding domain 169 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car04g01161 298 ProSiteProfiles WRKY domain profile. 169 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g01161 298 MobiDBLite consensus disorder prediction 76 117 - -
Car04g01161 298 Pfam WRKY DNA -binding domain 176 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g01161 298 Coils Coil 119 139 - -
Car04g01161 298 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 284 - -
Car04g01161 298 SMART WRKY_cls 174 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g01161 298 MobiDBLite consensus disorder prediction 141 164 - -
Car04g01161 298 MobiDBLite consensus disorder prediction 228 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01161 Car-Chr4 11835117 11836737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01161 153 249 WRKY Transcription Factor Family AT5G52830 83.505 2.33e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car04g01161 WRKY 6.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01161 K13425 - cam:101509183 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01190 08 13589632 13595531 Car04g01161 04 11835117 11836737 PCT