Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01152 ATGGAACAGAAGCACGTTTTGTTGTCAGCAttgagtgttggggttgctttgggtgttggattgggaaaatgggttagtgttggggttgATTTTAATGACATTTCTGAGGAACAGATTGTGATGGAGCTCATGAACCTTGTCATTGATGGCAAAGATAGTGGAATCACATTCGATGAGtttccttattacttaagTGTAAATATCCAAATTTTGTTGATAAGGGCTGGATATGTTTATTTTAAACAAGATAACTTATTGAGGCACACGAGGAACCTTTCACCAGTAAGCCGAGCTATTTTGCTTTCTGGACCTGCAGAACTTTATCAGCAAAATATTGCTAGAGCTTTAGCACGTTACTTTGAATCAAAGTTACTGTTGCTAGATATTACTGACTTCTCTTTGAAGATGCAGAACAAATACGGTTGTCCTAGAAAAGAACCGGATTTAAAAAGGTCCATATCTGAGAAAGTGTCAGATTTATTTGGTTCTCTGTCAATCCTCCCTTCAACGGGCGCAATTAGAGCTCCTTTGAAGTGCACAAACCGCTTCTGTTTTGATGAAAATATTTTCCTGGATTCACTCTACAAGGTCTTGGTTTCTATATCAGAAGTTGATTCTGTTATTTTATACATCAAGGATGTTGAGAAGATCTTTCATCGATCACCAAGGATGTACAGTTTGTTCCAAAAGCTATTAAAGAAACTTTCAGGATCAGTGTTAATACTCGGTTCCCGGACATATGATTCAGAAGATAATAATTGTATAGAAGTTGATGAAAAACTCACTATGTTATTCCCTTGCAACATTGAGATAAAACCGCCTCAAGATGAGACTCATCTCAAAATCTGGAATGCCCAACTTAAAAAGGCCATGAAAGAGACTCGTTTGATAGATACCAGAAACCATGTAGAGGAAGTGTTGGCAGCCCACGAGATTGACTGTGATGACTTGAATTCAATCGGTGATACTGACATTGTGCTGCTTGGTAATTACATCGAAGAGATTGCGACATCTGCAATTTGTTATCACTTGATGGATAACAAGCATCCAAAATACAAAAATGGAAAGCTAATTATATTGGCCAAAAGTTTGTTCCATGTATTGACTTTGTTCCAGGAGAGTAAAAGCAATGAGAAGGATAATACGAAGACTAAAAAACCAAAAAAGAAAGTTCCTCATAATGATGTCTTTGAGGAGCACATAAGACAAGAGGTTATCTCTGCAAATGAGATAGGGGTGACATTTTCAGATATTGGTGCAGTGGATGATGTTAAAGAATCACTTCAGGAAGCGGTTATGCTTCCCCTTAGAAGACCAGAACTATTCAAAGGTGGTGGGCTTTTGAAGCCTTGTAAAGGTGTATTGCTTTTCGGACCTCCTGGTACAGGGAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCACCGTCCACCATCACTGCAATGTGGTTTGGAAATGGTGAAAAAAATGTCCGGGCTCTTTTTTCGCTAGCGGCAAAGGTTGCCCCAACCATTATTTTCATTGATGAAGTTGATAGCTTGCTTGGGCAACGGTCTAATGGTCAGCATGAGCACAACTCAATGAGAAGACTTAAAAATGAATTCATGTCTCGCTGGGATGGACTGTTGTCGAAACCTGATGAGAAAATTCTTGTTCTTGCTGCTACCAACATGCCATTTGACCTTGATGAAGCAATTATCAGACGGTTCCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAGAACAGGGAATCGATCTTGAAAACTCTTCTAGCTAAGGAAAAACATGAAAATATAGACTTCAAAGAACTTTCAATTATGACAAAAGGATATAGTGGAAGTGATCTTAAGAACTTGTGCATGACTGCAGCTTATCTCCCCGTCAAGGAGCTAATACAACAGGAGAAGGCAAAAGATGTGAAAAAGGAGGCAAAAGTTGAAATCTCAGAAGATACTTCCAATGCTATAGAAGACAAAGAAGATCAAGTGATTGCCCTCAGGCCTTTAAACATGGAAGACATGAGACATGCAAAGAATAAGGTGGCTGCAAGTTTTTCTGAAAATGGATCAATGATGAACATGTTGATGAAGTGGAATGATTTGTACGGTGAAGGAGGTTCAAAGGAGAAAGTGGAAACGCCAAGTTATTTCATTTAA 2184 0.3768 MEQKHVLLSALSVGVALGVGLGKWVSVGVDFNDISEEQIVMELMNLVIDGKDSGITFDEFPYYLSVNIQILLIRAGYVYFKQDNLLRHTRNLSPVSRAILLSGPAELYQQNIARALARYFESKLLLLDITDFSLKMQNKYGCPRKEPDLKRSISEKVSDLFGSLSILPSTGAIRAPLKCTNRFCFDENIFLDSLYKVLVSISEVDSVILYIKDVEKIFHRSPRMYSLFQKLLKKLSGSVLILGSRTYDSEDNNCIEVDEKLTMLFPCNIEIKPPQDETHLKIWNAQLKKAMKETRLIDTRNHVEEVLAAHEIDCDDLNSIGDTDIVLLGNYIEEIATSAICYHLMDNKHPKYKNGKLIILAKSLFHVLTLFQESKSNEKDNTKTKKPKKKVPHNDVFEEHIRQEVISANEIGVTFSDIGAVDDVKESLQEAVMLPLRRPELFKGGGLLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSPSTITAMWFGNGEKNVRALFSLAAKVAPTIIFIDEVDSLLGQRSNGQHEHNSMRRLKNEFMSRWDGLLSKPDEKILVLAATNMPFDLDEAIIRRFQRRIMVGLPSAENRESILKTLLAKEKHENIDFKELSIMTKGYSGSDLKNLCMTAAYLPVKELIQQEKAKDVKKEAKVEISEDTSNAIEDKEDQVIALRPLNMEDMRHAKNKVAASFSENGSMMNMLMKWNDLYGEGGSKEKVETPSYFI 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01152 727 CDD AAA 452 586 - -
Car04g01152 727 SMART AAA_5 450 588 IPR003593 -
Car04g01152 727 Pfam AAA+ lid domain 607 650 IPR041569 -
Car04g01152 727 Pfam ATPase family associated with various cellular activities (AAA) 454 585 IPR003959 GO:0005524|GO:0016887
Car04g01152 727 ProSitePatterns AAA-protein family signature. 558 577 IPR003960 GO:0005524|GO:0016887
Car04g01152 727 Gene3D - 413 697 IPR027417 -
Car04g01152 727 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 177 389 - -
Car04g01152 727 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 177 - -
Car04g01152 727 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 390 726 - -
Car04g01152 727 Gene3D - 587 690 - -
Car04g01152 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 636 IPR027417 -
Car04g01152 727 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 177 - -
Car04g01152 727 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 390 726 - -
Car04g01152 727 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 177 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01152 Car-Chr4 11759854 11765598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01152 413 689 Calmodulin-binding Proteins AT3G56690 35.211 1.04e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01152 - - cam:101506297 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01152 04 11759854 11765598 Car08g01169 08 12823808 12830915 PCT