Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g01136 | ATGGGAGATCTCCATATTTGGGGAAGCCACTTCTCCATATTGGGACGGATTAGTGTCATTGGTGTGCTTTGCAGCGTCCTCCTTTCTTTTCTTTATTTCAGTTTCAAGAGAGGCTCCGTTTCTCTCTCTCTAAACTCTCTCTCTACATCACCGCTTCGGAGACAACGCCGGAACCCACATTCCTTACCGGAAATTCTTTTCCACCGTCGAGAAAAACCTTGTTCCTATCCTTTAAACCGAACTGCTCCGACCAGGTCTCAAGATGGTGGTGTTTCGGTGAATCTCTCACATGGAATGGCAGATCTTGTTAATCACAGGAATTCCGACCGTGACATTCAACAGACATTGATTGCTTTGAAAAAGGGTGCTCAATTGCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAAGGATGAATTGTCATTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTCTAAAACTATCTTCTATCTCGAAAATTATTCCTGGACAAAGAACTGCTGTTTTCCAGCGATATCTGCGTCCTGAGAAGGATTATTTATCTTTTTCACTTATTTATAACCACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATATCTGGCCTCGGGGAATTGATATCTTTTGGACAAGGTGGGCGGTCCAAAATTGACGGATGGTGTGATGGAGGCCTAAATCTTGATGATAATAGAGACTTGACTTCAAATAGTCCTAGTGAAAGTTCGGTCAGTGCTTCTCACGACATCATTAGTTCTCCTGACGTTTCTGCTAGCGTGCCAAACACTTCTCCAAATTCCATTCAGCCTGAAAATACCTTAAATTTCGAAAGGTCACATGCACCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTTTCCAGTGCCCCCAGCACGTCCAGTCATGGGTCTGCACCAGATGATTACGATGCTCTCGGGGATGTATACATATGGGGGGAGGTTATCTCTGAGAATGTTGTGAAAGTTGGTGCTGATAAAAATGTCAGTTATTGTAGCCCGAGAACTGATATTCTCCTCCCGAAGCCACTTGAATCCAATGTGGTTTTAGACGTACTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATGTTTACATGGGGCGAAGAATCTGGTGGACGCCTTGGCCATGGTGTTGGCAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTAGCTTCTACAACCGTTGATTTTGTCGCATGTGGGGAGTTCCATACCTGTGCTGTTACAATGACTGGGGAAATATATACATGGGGTGATGGCACTCACAATGCCGGACTTCTTGGTCACGGAACAGATGTTAGTCATTGGATACCGAAGAGAATTGCAGGTCCACTAGAGGGGCTTCAGGTTGCTTTTGTCACTTGTGGTCCGTGGCATACAGCTTTGATAACTTCAACCGGGCAGCTCTTTACATTTGGCGATGGAACATTTGGTGTCTTGGGCCATGGAGATCGAGAAAATATTTCGTATCCTAGAGAAGTAGAATCCTTATCTGGGTTGAGGACGGTAGCTGTTGCATGTGGAGTGTGGCATACTGCGGCTATTGTAGAGGTCATTGTGGCACAATCCAGTGCGAGTATATCGTCAGGCAAATTGTTTACATGGGGAGATGGAGATAAGAATCGCCTAGGACATGGAGACAAGGACGCCCGGCTCGAACCAACGTGTGTATCTGCCCTTATCGATTACAATTTTCATCGAATTGCTTGCGGGCACAGTTTGACAGTAGGCCTAACAACGTCTGGACATGTTTTTACTATGGGTAGCACTGTTTATGGCCAGCTTGGAAATCCTCAGTCTGATGGAAAGCTTCCATGTTTGGTCGAAGACAAGCTCGCTGGAGAATGTGTTGAAGAAATTGCATGCGGGGCTTATCATGTTACTGTTTTAACCTCCAAAAATGAAGTTTATACTTGGGGTAAGGGTGCAAATGGAAGATTGGGTCACGGAGACATTGAAGATCGAAAAATGCCTACTTTGGTTGAAGCCTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCGGCCGCCATATGCCTACATAAATGGGTATCTGGCGCCGAGCAGTCTCAATGCTCTACTTGTAGACAGGCATTTGGATTCACTAGAAAGCGGCACAATTGTTATAATTGCGGACTTGTGCACTGCCATTCGTGCAGTTCAAGGAAAGCATTTAGAGCAGCCCTTGCTCCTAATCCTGGGAAGCCGTATCGTGTTTGTGATTCTTGTTACACAAAATTGATCAAGATTGCAGAATCCAGCAATAATAATCGGAGGAATGGAATGCCTCGTTTTCCGGGAGAAAACAAAGACAGGTTAGAAAAGTCAGAGCTAAGATTGTTGAAGCCAGCCGTTCCCTCTAATATGGATCTGATAAAGCAATTAGATAGTAAGGCAGCCAAGCAAGGGAAAAAGGCCGATACATTCTCTCTGGTTCGCACCTCACAACCACCATCTATGCTACAGCTGAAAGATGTTGTATTGTCTACTGCTATGGACCTGAAACGCACAGTCCCAAGACCTGTTCTTACACCTTCTGCAGTGAGTTCTAGGTCTGTATCGCCTTTCTCTAGAAGGTCAAGCCCCCCTCGTTCAGCTACGCCCATTCCAACAACATCAGGACTTGCCTTCTCAAAAAGCATTACTGATAGTTTGAAGAAAACAAATGAACTTTTGAATCAAGAAGTGCTGAAGTTGCGTTCTCAGGTTGAGACCCTGAGACAGAGATGTGAGATGCAAGAATCTGAGCTTAAAAGGTCAGCGAAAAAGACTCAGGAAGCTATGGCTCTAGCTACCGAGGAATCTACCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCAGAGAGGCTTCCTCCCGGTGTTAATGATGCCAATAAAATCAAACCAGCATACCTGCCTAATGGTTTTGAGCCAAATGGCAGCCACCATCCAGACTCAAACGGGGAGCAGCGCCACACAAGGGCAGAGTCGATCAGCGGCTCCAGTTTCACATCCATAGGACTTGAATTTTCTCCAATGAATAGAACCGAAGGGAATTCACCTGTAAGCTATGCAACTAATCTTTACCAGCAAAACCGGGGATCTTTGACCTCTAACAGGACAGATGATTACCGAGATGTTAAATTGCCAAATGGTGGCGGCGCGATTCAGACAATCAACAGTAGTGCGCCGGATACTGTTAACGGTAGGGATTCTGGGAATTTCCGAGATGATGAGAATGGCTCGAGAGCGAGGAATGATGCGATGCCTGCTAACAATAATCAAGTTGAGGCAGAATGGATTGAACAGTACGAACCTGGTGTCTATATAACTCTGACTGCCATGCGCGATGGAACAAGAGATTTGAAGAGAGTTCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCCGAGACTTGGTGGTCAGAGAATCGCGATAAGGTATATGAAAGGTACAATGTTCGCAGTACAGACAAGTCGTCGAGCCAAGCAGCGCGTAGGACAGAAGGTGCTGGTTCACCTGTTCTATAA | 3651 | 0.4492 | MGDLHIWGSHFSILGRISVIGVLCSVLLSFLYFSFKRGSVSLSLNSLSTSPLRRQRRNPHSLPEILFHRREKPCSYPLNRTAPTRSQDGGVSVNLSHGMADLVNHRNSDRDIQQTLIALKKGAQLLKYGRKGKPKFCPFRLSKDELSLIWISSSGERSLKLSSISKIIPGQRTAVFQRYLRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWISGLGELISFGQGGRSKIDGWCDGGLNLDDNRDLTSNSPSESSVSASHDIISSPDVSASVPNTSPNSIQPENTLNFERSHAPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVISENVVKVGADKNVSYCSPRTDILLPKPLESNVVLDVLQIACGVKHAALVTRQGEMFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMTGEIYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENISYPREVESLSGLRTVAVACGVWHTAAIVEVIVAQSSASISSGKLFTWGDGDKNRLGHGDKDARLEPTCVSALIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGECVEEIACGAYHVTVLTSKNEVYTWGKGANGRLGHGDIEDRKMPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKAFRAALAPNPGKPYRVCDSCYTKLIKIAESSNNNRRNGMPRFPGENKDRLEKSELRLLKPAVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQPPSMLQLKDVVLSTAMDLKRTVPRPVLTPSAVSSRSVSPFSRRSSPPRSATPIPTTSGLAFSKSITDSLKKTNELLNQEVLKLRSQVETLRQRCEMQESELKRSAKKTQEAMALATEESTKSKAAKEVIKSLTAQLKDLAERLPPGVNDANKIKPAYLPNGFEPNGSHHPDSNGEQRHTRAESISGSSFTSIGLEFSPMNRTEGNSPVSYATNLYQQNRGSLTSNRTDDYRDVKLPNGGGAIQTINSSAPDTVNGRDSGNFRDDENGSRARNDAMPANNNQVEAEWIEQYEPGVYITLTAMRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSTDKSSSQAARRTEGAGSPVL | 1216 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g01136 | 1216 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 501 | 552 | IPR000408 | - | |
| Car04g01136 | 1216 | SUPERFAMILY | FYVE/PHD zinc finger | 720 | 793 | IPR011011 | - | |
| Car04g01136 | 1216 | MobiDBLite | consensus disorder prediction | 951 | 973 | - | - | |
| Car04g01136 | 1216 | Coils | Coil | 920 | 961 | - | - | |
| Car04g01136 | 1216 | CDD | PH_PLC_plant-like | 110 | 222 | - | - | |
| Car04g01136 | 1216 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 487 | 497 | IPR000408 | - | |
| Car04g01136 | 1216 | Gene3D | - | 285 | 556 | IPR009091 | - | |
| Car04g01136 | 1216 | Gene3D | - | 557 | 725 | IPR009091 | - | |
| Car04g01136 | 1216 | Coils | Coil | 976 | 996 | - | - | |
| Car04g01136 | 1216 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 111 | 1199 | - | - | |
| Car04g01136 | 1216 | MobiDBLite | consensus disorder prediction | 1194 | 1216 | - | - | |
| Car04g01136 | 1216 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 501 | 549 | IPR000408 | - | |
| Car04g01136 | 1216 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 669 | 716 | IPR000408 | - | |
| Car04g01136 | 1216 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 394 | 442 | IPR000408 | - | |
| Car04g01136 | 1216 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 563 | 610 | IPR000408 | - | |
| Car04g01136 | 1216 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 446 | 497 | IPR000408 | - | |
| Car04g01136 | 1216 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 615 | 663 | IPR000408 | - | |
| Car04g01136 | 1216 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 564 | 615 | IPR000408 | - | |
| Car04g01136 | 1216 | SUPERFAMILY | RCC1/BLIP-II | 331 | 721 | IPR009091 | - | |
| Car04g01136 | 1216 | MobiDBLite | consensus disorder prediction | 998 | 1131 | - | - | |
| Car04g01136 | 1216 | ProSiteProfiles | BRX domain profile. | 1138 | 1193 | IPR013591 | - | |
| Car04g01136 | 1216 | Pfam | Transcription factor BRX N-terminal domain | 971 | 1006 | IPR027988 | - | |
| Car04g01136 | 1216 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 616 | 667 | IPR000408 | - | |
| Car04g01136 | 1216 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 668 | 719 | IPR000408 | - | |
| Car04g01136 | 1216 | MobiDBLite | consensus disorder prediction | 1094 | 1109 | - | - | |
| Car04g01136 | 1216 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1137 | 1192 | IPR013591 | - | |
| Car04g01136 | 1216 | SUPERFAMILY | PH domain-like | 111 | 221 | - | - | |
| Car04g01136 | 1216 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 539 | 549 | IPR000408 | - | |
| Car04g01136 | 1216 | Gene3D | - | 111 | 225 | IPR011993 | - | |
| Car04g01136 | 1216 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 446 | 500 | IPR000408 | - | |
| Car04g01136 | 1216 | Pfam | FYVE zinc finger | 720 | 785 | IPR000306 | GO:0046872 | |
| Car04g01136 | 1216 | MobiDBLite | consensus disorder prediction | 1033 | 1078 | - | - | |
| Car04g01136 | 1216 | MobiDBLite | consensus disorder prediction | 267 | 286 | - | - | |
| Car04g01136 | 1216 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 724 | 786 | IPR017455 | - | |
| Car04g01136 | 1216 | PRINTS | Chromosome condensation regulator RCC1 signature | 380 | 396 | IPR000408 | - | |
| Car04g01136 | 1216 | PRINTS | Chromosome condensation regulator RCC1 signature | 490 | 508 | IPR000408 | - | |
| Car04g01136 | 1216 | PRINTS | Chromosome condensation regulator RCC1 signature | 211 | 227 | IPR000408 | - | |
| Car04g01136 | 1216 | PRINTS | Chromosome condensation regulator RCC1 signature | 396 | 410 | IPR000408 | - | |
| Car04g01136 | 1216 | PRINTS | Chromosome condensation regulator RCC1 signature | 559 | 580 | IPR000408 | - | |
| Car04g01136 | 1216 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 394 | 445 | IPR000408 | - | |
| Car04g01136 | 1216 | SMART | fyve_4 | 718 | 787 | IPR000306 | GO:0046872 | |
| Car04g01136 | 1216 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 111 | 1199 | - | - | |
| Car04g01136 | 1216 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 380 | 390 | IPR000408 | - | |
| Car04g01136 | 1216 | MobiDBLite | consensus disorder prediction | 881 | 912 | - | - | |
| Car04g01136 | 1216 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 332 | 393 | IPR000408 | - | |
| Car04g01136 | 1216 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 726 | 797 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car04g01136 | Car-Chr4 | 11610890 | 11621403 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car04g01136 | 980 | 1209 | Major Intrinsic Protein MIP | AT1G31880 | 29.130 | 6.07e-16 | 79.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g01136 | - | - | gmx:100783270 | 1882.07 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car04g01136 | 04 | 11610890 | 11621403 | Car04g01136 | 04 | 11610890 | 11621403 | ECH | |
| Car08g01118 | 08 | 11480221 | 11489633 | Car04g01136 | 04 | 11610890 | 11621403 | PCT |