Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01121 ATGTCCTTCCGTAGTATAGTTCGTGATGTGAGAGATGGATTTGGAAGTTTATCGAGGCGGAGTTTCGAGGTAAGGCTTCCTGGAAATCAAAGGGGAAAATCGCGTAGTTCGGTCCACGAATTGCATGATCAGCCACCAGTTATACAGAATAGCCGGTGGGCTAGCCTTCCACCAGAGCTTCTTCGCGATGTCATTAAGAGACTGGAAGCAAATGAGAGTACTTGGCCTGGTCGGAAGCACGTGGTTGCTTGTGCTGCTGTGTGCAAGTCTTGGAGAGAAATGTGCAAAGAAATTATTAACAGTCTTGAATACTGTGGGAAGATTACTTTCCCTGTTTCTTTGAAGCAGCCCGGTTATAGGGATGGACCGATTCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATATCATCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCGAAACGTACTAGAAGAACGACTTGCACGGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATCGGAAAGCTTAGGTCTAATTTTCTCGGAACCAAGTTTATAATTTACGATACACAGCCTCCGTATAATAATGCTCAGCTGGCTCCACCTGGACGCAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCGAAGGTACCTAGTGGCAGCTACAATATCGCCCAAGTCACTTATGAGTTGAATGTCCTAGGTACTAGAGGCCCACGAAGGATGAATTGTGCTATGTACTCAATCCCCGCATCGTCCCTTGAGCCCGGTGGCATCGTCCCAGGCGAGCCAGAGCTTGTTCCCCGTTCACTCGAGGATTCTTTTCGGAGTTTATCCTTTGCAAAATCAATCGACACTTCAACTGAGTTTAGCAGCTGTAGGTTCTCTGACATAATGGGAGCTGGCAATGAAGATGACGAGGGGAAGGAGATGCCTCTCGTTCTTAAGAACAAGTCTCCAAGATGGCACGAACAGCTGCAGTGTTGGTGCCTTAACTTTAGGGGAAGGGTGACAGTCGCGTCGGTTAAGAATTTTCAGCTGATTGCTGCAACACAGCCTGCAGCTAGTGCGGCTCCTACGACAACAGGACCTGCACCTGCACGCTCTCAGCCGACACAGTCTGACCATGACAAGATTATTCTTCAGTTTGGGAAGGTTGGCAAGGATATGTTCACAATGGACTATCGATACCCTATCTCGGCATTTCAGGCTTTCGCCATATGCTTGACTAGCTTTGACACAAAGCTTGCATGTGAATAA 1299 0.4642 MSFRSIVRDVRDGFGSLSRRSFEVRLPGNQRGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVIKRLEANESTWPGRKHVVACAAVCKSWREMCKEIINSLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCAMYSIPASSLEPGGIVPGEPELVPRSLEDSFRSLSFAKSIDTSTEFSSCRFSDIMGAGNEDDEGKEMPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAASAAPTTTGPAPARSQPTQSDHDKIILQFGKVGKDMFTMDYRYPISAFQAFAICLTSFDTKLACE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01121 432 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Car04g01121 432 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Car04g01121 432 Gene3D Tubby Protein; Chain A 112 426 IPR025659 -
Car04g01121 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Car04g01121 432 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 432 - -
Car04g01121 432 Pfam Tub family 114 427 IPR000007 -
Car04g01121 432 ProSitePatterns Ribosomal protein L34e signature. 16 29 IPR018065 -
Car04g01121 432 Gene3D - 48 102 - -
Car04g01121 432 Pfam F-box domain 53 98 IPR001810 GO:0005515
Car04g01121 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Car04g01121 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Car04g01121 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Car04g01121 432 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Car04g01121 432 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Car04g01121 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Car04g01121 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Car04g01121 432 PANTHER TUBBY-RELATED 1 432 - -
Car04g01121 432 SUPERFAMILY Tubby C-terminal domain-like 103 432 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01121 Car-Chr4 11328532 11332056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01121 1 432 TUB Transcription Factor Family AT1G76900 70.110 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Car04g01121 Tub 2.4e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01121 K19600 - gmx:100817532 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01121 04 11328532 11332056 Car04g01121 04 11328532 11332056 ECH
Car08g01138 08 12016978 12022166 Car04g01121 04 11328532 11332056 PCT