Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01117 ATGGTATCCAGTTTTCCCAATGGGCCAAGCCCATATGTAAACCCACACCAAGCCCATAAAAAGGTTAGAAAACCCTGTTCTTTTCTTTCTATCATCAACGAGGTTTTGAGTCGTCGAAGAAACCCTTTCAGCGAGTGCCGCCGCCGCAGACCTCTTCCCTGCAGCACCGCATTCAACATGTCTCTCGTGGCAAATGAAGAATTTCAACACATTCTTCGTGTTTTGAACACAAACGTTGATGGCAAGCAGAAGATAATGTTTGCCCTTACCTCAATTAAGGGTATTGGAAGGAGATTTGCTAATATTTGCTGTAAGAAGGCTGATGTTGACATGAACAAAAGAGCTGGTGAGCTTAGTGCTGCTGAGTTGGACAATCTGATGACTGTGGTTGCCAATCCTAGGCAATTCAAGATTCCTGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAGTTTTCTCAGGTTGTTTCAAATTCATTGGATATGAAGTTGAGGGATGACTTGGAGAGACTCAAGAAAATCAGGAACCACCGAGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGTCAGCATACCAAGACTACCGGTCGTCGGGGTAAAACAGTTGGTGTCTCAAAGAAGCGCTGA 636 0.445 MVSSFPNGPSPYVNPHQAHKKVRKPCSFLSIINEVLSRRRNPFSECRRRRPLPCSTAFNMSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKFSQVVSNSLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01117 211 ProSiteProfiles Ribosomal protein S13 family profile. 74 204 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car04g01117 211 ProSitePatterns Ribosomal protein S13 signature. 180 193 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car04g01117 211 Pfam Ribosomal protein S13/S18 73 201 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car04g01117 211 SUPERFAMILY S13-like H2TH domain 72 211 IPR010979 GO:0003676
Car04g01117 211 Gene3D - 60 139 - -
Car04g01117 211 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 54 211 - -
Car04g01117 211 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 54 211 - -
Car04g01117 211 Gene3D 30s ribosomal protein s13, domain 2 151 201 IPR027437 -
Car04g01117 211 Hamap 30S ribosomal protein S13 [rpsM]. 71 211 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01117 Car-Chr4 11279813 11281724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01117 60 211 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.395 3.30e-108 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01117 K02964 - fve:101305944 296.589