Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01112 ATGACTGAACCTTCCAAGGTCATTCACGTTCGAAATGTCGGGCACGAAATATCTGAAAAGGATTTATTTCTGCTATTTCAACGTTTTGGAGCCATAACAAAGCTTGTGATGTTGCGTGCAAAAAATCAGGCACTTATCCAAATGCAAGATGTTCCTTCTGCAATTAGTGCTTTACAGTTTTATGCAAACACTCAGCCTAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCCTCTCATCAAGAGCTAACAACAGTAGATCAAAGTCAAGGACGGGGAGATGAGCCAAACCGGATTCTCTTAGTTACAATTCATCATGTGCTCTATCCCATAACGGTGGATGTACTATATCAAGTTTTTTCTCCCCATGGATCTGTGGAGAAGATTGTGACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTACCCATCACAACAGAGTGCTGTTGCTGCGAGAACTGCACTTCAGGGTCGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAATTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGAGACTTCACAAACCCTAATCTCCCTACAGAACAGAAAGGCAGACCTTCACAACTTGGATATGGTGATGCAGGAAACATGTATGGTGGTGTTCAGGGTTCTGGAGCCAGGGCAGGTGCTCAACTTAACTGCTTTAGtttgtttttgttttttaaattttgtATGCCCAATGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGAATAACTGGGACAAATGAAAGGTGTACACTTCTTGTCTCAAATCTTAATCCTGACAGCATTGACGAGGACAAACTGTTCAACTTGTTTTCGCTTTATGGGAACATTGTGAGAATTAAACTTCTGCGGAATAAACCAGATCATGCACTTGTCCAGATGGGAGATGGTTTCCAAGCTGAACTCGCAGTACACTTTCTGAAGGGAGCCATATTGTTTGGGAAGCGACTTGAGGTCAACTACTCGAAGCATCCAAACATAACCCAAGGTGCTGACACGCACGAGTACATCAACTCAAATCTCAACCGTTTTAACCGTAACGCAGCTAAAAACTACCGCTATTGCTGCTCCCCGACGAAGATGATCCATTTGTCCACACTCCCACAAGACATCACTGAGGAGGAGATTGTGAACCTTCTAGAGGACCATGGAACCATTGTCAACAGCAAAGTCTTTGAGATGAATGGGAAGAAACAAGGTCTTGTTCAGTTTGATACTGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCCACCTCACTTTCTGGCTCAGTAATTCGGATCTCATATTCTCAGTTGCAGAATATATGA 1368 0.4335 MTEPSKVIHVRNVGHEISEKDLFLLFQRFGAITKLVMLRAKNQALIQMQDVPSAISALQFYANTQPSIRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYPSQQSAVAARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQLGYGDAGNMYGGVQGSGARAGAQLNCFSLFLFFKFCMPNAAAIAAAFGGGLPPGITGTNERCTLLVSNLNPDSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAILFGKRLEVNYSKHPNITQGADTHEYINSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVNLLEDHGTIVNSKVFEMNGKKQGLVQFDTEEQATEALVCKHATSLSGSVIRISYSQLQNI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01112 455 MobiDBLite consensus disorder prediction 187 202 - -
Car04g01112 455 Gene3D - 262 358 IPR012677 -
Car04g01112 455 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Car04g01112 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 352 - -
Car04g01112 455 Pfam RRM-like domain 95 174 IPR021790 -
Car04g01112 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 452 IPR000504 GO:0003723
Car04g01112 455 SMART rrm1_1 269 338 IPR000504 GO:0003723
Car04g01112 455 SMART rrm1_1 7 76 IPR000504 GO:0003723
Car04g01112 455 SMART rrm1_1 379 448 IPR000504 GO:0003723
Car04g01112 455 SMART rrm1_1 101 170 IPR000504 GO:0003723
Car04g01112 455 Gene3D - 96 201 IPR012677 -
Car04g01112 455 CDD RRM3_PTBPH3 267 342 IPR034797 -
Car04g01112 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Car04g01112 455 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 454 - -
Car04g01112 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Car04g01112 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 446 IPR000504 GO:0003723
Car04g01112 455 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 451 IPR006536 GO:0003723|GO:0005634|GO:0006397
Car04g01112 455 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Car04g01112 455 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 454 - -
Car04g01112 455 Gene3D - 361 455 IPR012677 -
Car04g01112 455 Gene3D - 1 95 IPR012677 -
Car04g01112 455 CDD RRM4_PTBPH3 371 449 - -
Car04g01112 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 342 IPR000504 GO:0003723
Car04g01112 455 MobiDBLite consensus disorder prediction 187 207 - -
Car04g01112 455 SUPERFAMILY RNA-binding domain, RBD 267 451 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01112 Car-Chr4 11225103 11231163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01112 111 337 Eukaryotic Initiation Factors Gene Family AT3G16380 26.692 3.19e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01112 K14948 - gmx:100819672 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01112 04 11225103 11231163 Car04g01112 04 11225103 11231163 ECH