Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01110 ATGTCTTATCCTCTGGTTTCGGCACCGACTCATGATGGATTGGGCCAGGCCCAAAATGAGTGGGTCCAAGTCCAACAAGGTTATGTCCCTGTCtctacttcttctaattattctcctcgtttgtattcttctacttctATTACttctagttctagtcctagttctagttcaagttctTGGGTAGTTGGACATAAAAGAGGGCGTGAAGATGATTTTCATAACACTCGTCAAGTTGCTGCTTCTTCTCATCATCAAGATTTTACCTCAATTCATACAAACGTTGCTGATTTTAGATTACCTTCTTCTCAAGGACCCTCATCATCAGaagcaagaagaagagagtcaaatgaagaagaaagtggagagagaagaagaagaTACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATTAGAGATCCACACAAAGCAGCAAGAGTATGGCTTGGTACATTCGAAACTgctgaagctgcagcaagagcttacgatgaagctgCTTTGAAATTCAGAGGTAGCAGAGCAAAACTCAACTTCCCTGAAAATGTTACTACAACAATTAGCCCCACTTTTCCGCCGAATACTTCTTCAACCGTTTCTGTTAATCCGGCAACTCATTATTCACCTGCACCACCACTTCAGATGCAACAACCACCGTTTACACAGTTTCAAGGTTCTTCTGATTTGTTGAGAGATTATTATCAATATTCTCAGATTTTGAAAGGTTCTGCTGATTTTCAAGGACTTGAACAATGGTTCTATGAATCTCAAATGGCAGCTATTCATTCATCTTCTTCAATGTTATCACCATCGCCACCGTTGCTttctttttcttcttcttcttcttcATTGCCAACCACTGCATTTTCACCGGCTACTCAATTATCCTCTGCTTCGCTTCCTCTGTTTCCTGGTCAGCAAATAGAGTTTTTCCGGCCGCCGGAAGATCACTCTCACGGCGAAGATGTTGGTGGTGGGTCTGGTTTACCACCTTCAACATGGTCAGATACCAGTGGCTATCCTCCTCCTTCGAGTTGA 1047 0.3591 MSYPLVSAPTHDGLGQAQNEWVQVQQGYVPVSTSSNYSPRLYSSTSITSSSSPSSSSSSWVVGHKRGREDDFHNTRQVAASSHHQDFTSIHTNVADFRLPSSQGPSSSEARRRESNEEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALKFRGSRAKLNFPENVTTTISPTFPPNTSSTVSVNPATHYSPAPPLQMQQPPFTQFQGSSDLLRDYYQYSQILKGSADFQGLEQWFYESQMAAIHSSSSMLSPSPPLLSFSSSSSSLPTTAFSPATQLSSASLPLFPGQQIEFFRPPEDHSHGEDVGGGSGLPPSTWSDTSGYPPPSS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01110 348 PANTHER DNA-BINDING DOMAIN 5 301 IPR044808 GO:0003700|GO:0009873
Car04g01110 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 5 301 - -
Car04g01110 348 MobiDBLite consensus disorder prediction 31 62 - -
Car04g01110 348 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Car04g01110 348 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Car04g01110 348 CDD AP2 134 185 IPR001471 GO:0003700|GO:0006355
Car04g01110 348 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Car04g01110 348 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Car04g01110 348 MobiDBLite consensus disorder prediction 31 133 - -
Car04g01110 348 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Car04g01110 348 MobiDBLite consensus disorder prediction 78 109 - -
Car04g01110 348 MobiDBLite consensus disorder prediction 333 348 - -
Car04g01110 348 MobiDBLite consensus disorder prediction 110 126 - -
Car04g01110 348 MobiDBLite consensus disorder prediction 63 77 - -
Car04g01110 348 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Car04g01110 348 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Car04g01110 348 MobiDBLite consensus disorder prediction 309 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01110 Car-Chr4 11201189 11203469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01110 81 194 AP2-EREBP Transcription Factor Family AT5G61890 57.895 1.15e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g01110 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01110 - - lja:Lj5g3v1937400.1 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01110 04 11201189 11203469 Car04g01110 04 11201189 11203469 ECH