Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01106 ATGGATCCTCATGCTGAAGATTTGCCTCGATACATTCATATAAATCAGAATGATTTTTTTATGCGAAGACATAAGAAGCAGAAGGAGGAAGATATTGCTGTATGTGAATGCAGGTATAATGCTGATGACCCTGATAGTGCATGTGCAGATGGGTGCCTAAATGTATTAACCAGCACTGAATGCACCCCTGGTCATTGCAATTGTGGTATCTTATGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGCTGTTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGCAGGACAATTTATAATTGAGTACTGTGGAGAAGTAATATCATCTAAAGAAGCCAAGCGTAGATCCCAGGCTTATGAAATTCAAGGTCTTAAGGATGCATTTATCATTTGTCTTAATGCGTCTGAGTCTATTGATGCAACTAGAAAAGGAAGCCTTGCCAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCTTGGGAGAAATAAGAGTTGGAATATTTGCAAGGGAAGACATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGGGCAAAAGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGGATTCCTGGGAGCAAAATCTCGTGGTTTTCAACAGGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAGTTGAGAAAATTCCTGTATATGACTCTGCGGAGGATGAACTGACTTCAAATGTTGATGGACAAAGTGAACACTCCATGGATATTGTACTTAAAGCTGAGGAACTATCGGAGTCCACTGTTTTGGATGTTCAACCACTTAATTCAGTTCTGATTAAGGATTTAGGTATCAAGAAAATTAAAACTGAACTAGTAAGCGAGGACATGAAGTTGTATTCCCAAGATACTGAACAGGACCTTCCACCAAAGAATGCAATGATATCACGCATTCGAAGTAACACTGCAGGAAGAAACTATCGCATTGGACCTAGATCCATGTCTAAGAAAAGATCAAAGGCATACTCTGGGGGAAGGTTTAAAAATCTCATACAGAAGAAAATTGATGCAAAGTATGCAGCTAGCCTTTTAGCATCAAAGGAAGCACAAGAGGAGATCTTAGATTATGAGAAAAGAAAAGATGATGCCACAGAGGCTCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAGGGATAGCCAAGACAGTGTATCTACGACAGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAACTGAAGGCAGAGTTTGATCTTTACTCGTCAATTGTTAAAAATGTTGCTTGTACCGCTCAAAGGGCACCTGGCCAATCAAAACCTACTGAAGGAGATATCGAAAACAAAATTAAGCTTTTAACAAATTGA 1449 0.3934 MDPHAEDLPRYIHINQNDFFMRRHKKQKEEDIAVCECRYNADDPDSACADGCLNVLTSTECTPGHCNCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFIIEYCGEVISSKEAKRRSQAYEIQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAREDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQQEDTYLWEDDDDRYSVEKIPVYDSAEDELTSNVDGQSEHSMDIVLKAEELSESTVLDVQPLNSVLIKDLGIKKIKTELVSEDMKLYSQDTEQDLPPKNAMISRIRSNTAGRNYRIGPRSMSKKRSKAYSGGRFKNLIQKKIDAKYAASLLASKEAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPGQSKPTEGDIENKIKLLTN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01106 482 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Car04g01106 482 Coils Coil 382 409 - -
Car04g01106 482 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0018024
Car04g01106 482 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Car04g01106 482 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Car04g01106 482 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Car04g01106 482 Gene3D SET domain 2 239 IPR046341 -
Car04g01106 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 8 421 - -
Car04g01106 482 Pfam SET domain 94 200 IPR001214 GO:0005515
Car04g01106 482 PANTHER SET DOMAIN PROTEINS 8 421 - -
Car04g01106 482 SUPERFAMILY SET domain 9 220 IPR046341 -
Car04g01106 482 SMART set_7 83 206 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01106 Car-Chr4 11171717 11176462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01106 66 222 C2H2 Transcription Factor Family AT2G23740 34.444 1.42e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car04g01106 SET 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01106 - - gmx:100804657 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01106 04 11171717 11176462 Car04g01106 04 11171717 11176462 ECH