Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01101 atGGGCTGTGTTCAAGCCAAACCATTTGAATTTGAATCTGAAAACACAACAAGTGCTCTTGATAGATTCAAAATGGAAAATGGTTATGTTCCAACTTCTGATTTTCTTGCTAATAGAAGATCCACTGGTCAAAAACATGTTCATCTTCACACTATTAGTAGGGAGGAGGATTCTGACTATCTTCATAATAGACAACACCCCACAAAGCATAAAGTACAAGTAGTTGATTCTAGTGGAAGGGAAAAGAAAGATTCTGATTTCAAATATATTAGTAAGAAGAAGCAGTCGAACAAGTGTTTTGAAGATGATATGGTTGATGGTTGGCCTAAATGGTTAGTTGATAATGTTCCAACTCATATTTTGGCTGCTTTGGTTCCCAAGAGTGCTGAATCTTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTCTATAAAGCTCTAGATCGAGACACGGGCGATATTGTGGCTCTAAAAAAGGTCCGATTCAATACATCAGAGCCCGGAAGCATTAAGTTTATGGCAAGAGAAATCACAATATTACAGAGATTGGATCATCCCAATGTAGTAAAACTTAAAGGGTTAGCCACTTCAAGAATGCAGTACAGTATATATCTGGTTTTTGATTTCATGCCAACAGATTTGTCAAGAATTATTGCTCGGCCCGAAGAAAGACTTACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTTCAGCATTGCCATGATAGGGGAATTTTGCATCGAGATATAAAGGGATCGAATCTTTTGATTGATAAAAATGGGATGCTTCAGATTGCGGATTTTGGACTTGCCAACTATTATAGCACTAATCAAGACCAGCCTCTCACAAACCGGGTTGTGACACTATGGTACAGAGCTCCTGAGCTGTTGTTAGGTTCCACATATTATGGAGTTGGTATTGATCTATGGAGTGCTGGATGTCTCCTTGCAGAAATGTTTAAAGGAATTCCAATCATGCCTGGAAGAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCGTCGGAAGACTATTGGAGAAAGTTAAAACTTTCTACAACTTTTAGACCTCCAAAGTCTTATAGACCTAGCCTGGTAGAAACTTTCAAGGATCTACCCTCATCTTCTTTAGGTCTTTTATGTACTCTTCTTGCTTTGGATCCTGCATTCCGCGGCAGTGCATCTAAGGCTCTTCAAAATCAGTTTTTCTTTACAAGCCCATTGGCTTGTGATCTGTCTGGTCTTCCTGCAATCTTCAAAGTAGATGATAAGCATATTCAAGCCAAAGAACAGATCAAGTATATTAACTCTAAAATCAGGCGTTCTCGTACATATCTGGAGCGTCGCAAGAATTTAGCATCTAATAGGCCACTAGAACATACTGTATCCTCTAAAGAGGTCTTGAGAAATAATGCCGAGGCTGAAACTTATGCTCCAAGTGAAGAACCAGGTAGTGCAACAAGTAGTACCTCATCTAGTGTAAACCAAGCTGGAGTTAGGGACCACTCACCCCTCTTTCTCTCTCCATTTCTGGCTTCCGATCAAAAGCTGCCCCACAAAATCTATAGGCATGCTAATATTGGTGAAAAAAACATCAAGAACCTTCCTCCATTATCCAAGTCAAAGCCAAATGTAACCAAGAAAGATGATAGCAGATATAAAACAGACCAGATTTTCAGGTCCACTTCCACAAGAGAATTTAGAAAGTTAAAAACAGAACAAAATTTACTCTTTGATATTGATGACTAG 1782 0.3917 MGCVQAKPFEFESENTTSALDRFKMENGYVPTSDFLANRRSTGQKHVHLHTISREEDSDYLHNRQHPTKHKVQVVDSSGREKKDSDFKYISKKKQSNKCFEDDMVDGWPKWLVDNVPTHILAALVPKSAESYKMIDKVGQGTYSNVYKALDRDTGDIVALKKVRFNTSEPGSIKFMAREITILQRLDHPNVVKLKGLATSRMQYSIYLVFDFMPTDLSRIIARPEERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANYYSTNQDQPLTNRVVTLWYRAPELLLGSTYYGVGIDLWSAGCLLAEMFKGIPIMPGRTEVEQLHRIFRLCGTPSEDYWRKLKLSTTFRPPKSYRPSLVETFKDLPSSSLGLLCTLLALDPAFRGSASKALQNQFFFTSPLACDLSGLPAIFKVDDKHIQAKEQIKYINSKIRRSRTYLERRKNLASNRPLEHTVSSKEVLRNNAEAETYAPSEEPGSATSSTSSSVNQAGVRDHSPLFLSPFLASDQKLPHKIYRHANIGEKNIKNLPPLSKSKPNVTKKDDSRYKTDQIFRSTSTREFRKLKTEQNLLFDIDD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01101 593 SUPERFAMILY Protein kinase-like (PK-like) 126 418 IPR011009 -
Car04g01101 593 Gene3D Transferase(Phosphotransferase) domain 1 215 449 - -
Car04g01101 593 Pfam Protein kinase domain 132 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01101 593 PANTHER CELL DIVISION PROTEIN KINASE 1 558 - -
Car04g01101 593 Gene3D Phosphorylase Kinase; domain 1 122 214 - -
Car04g01101 593 MobiDBLite consensus disorder prediction 467 508 - -
Car04g01101 593 ProSiteProfiles Protein kinase domain profile. 132 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01101 593 PANTHER CYCLIN-DEPENDENT KINASE 1 558 - -
Car04g01101 593 MobiDBLite consensus disorder prediction 492 508 - -
Car04g01101 593 SMART serkin_6 132 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01101 593 MobiDBLite consensus disorder prediction 467 481 - -
Car04g01101 593 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Car04g01101 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01101 Car-Chr4 11149995 11154748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01101 127 475 Core Cell Cycle Gene Families AT5G10270 42.077 1.28e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car04g01101 Pkinase 8.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01101 K08819 - gmx:100776854 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01101 04 11149995 11154748 Car04g01101 04 11149995 11154748 ECH