Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01085 ATGGAAAATAATGTTGTTGTCCCTTTTAGTGTTACTACCTCTTTCTTGTTTTTGTTACTCTCTTTTTTTAGCTTAACAAACATACAACAACTCACTTGTCTTTCACCAGATGGACAAGCCCTTCTTTCTCTTGTTTCATCATCTTCTGTTCTTTCCTCATGGAATCCATCAACCTCAACACCTTGTTCTTGGAAAGGCATTACTTGTTCTCCACAAGGTAGAGTCATTTCCCTTTCTATCCCTGATACTTGCCTTAATCTTTCTTCTTTACCACCTCAACTATCATCTTTATCAATGCTTCAGCTTCTTAATCTTTCTTCCACTAATATCTCTGGCTCTATTCCACCTTCTTTTGGTCAACTCTCCCATCTTCAACTTCTTGACTTTTCTTCAAACTCTCTCACAGGTTCCATTCCTGATGAACTTGGAAACCTCTCTTCTCTTCAGTTCCTTTTCTTGAACTCCAACAGATTAACAGGAACCATTCCTCCACAACTTTCCAACCTTACTTCACTTGAAGTTCTTTGTCTTCAAGACAATCTTATAAATGGTTCAATCCCTTCACAGTTAGGCTCTTTGAAATCACTTCAACAGTTTAGGATCGGTGGCAACCCTTTTCTAAGTGGAAAAATCCCATCACAGTTAGGACAACTCACCAACCTCACAACATTTGGTGCAGCAGCCACTGGACTTTCTGGTTCCATTCCTTCTACATTTGGTAACTTGATCAATCTTCAAACTTTAGCACTTTATGACACTGAAATTTCTGGCTCAATACCAAAAGAACTTGGTTTATGTTCTGAGTTGAGGAATCTTTATTTACATATGAATAAGCTTACTGGTTCTATTCCttttcaatttggcaagttgcaaaaacttactagtttgcttctttggggaaacGCATTAACTGGTGAAATTCCACCTGAAATTTCCAACTGTTCATCACTTGTTATATTTGATGCATCTTCTAATGATCTATCTGGTGAAATACCTGAGGATTTTGGGAAGCTGGTTGTTCTTGAACAGCTTCATTTATCGGATAATTCGCTCACCGGTGAAATACCGTGGCAGTTGAGTAACTGCACAAGCCTTGCAACTATTCAGCTTGATAAGAATCAGTTATCAGGTACAATTCCTTATCAGGTTGGTGAATTGAAGCTTCTGCAGAGTTTTTTCTTGTGGGGTAATTTGGTTTCTGGAACAATACCATCCTCTTTTGGAAACTGTACAGAACTGTATGCACTTGATCTTTCAAGGAATAAGTTAACAGGTTTTATACCAGAAGAGATTTTCAGTTTGCAGAAGCTGAGTAAGCTTCTTCTTCTTGGAAACTCATTAACAGGAAGGTTGCCTTCAAGTGTTGCAAATTGTCAGTCTTTGGTGAGGTTGAGGGTTGGTGAAAACCAGCTTTCAGGACAGATTCCTAAAGAGATAGGAAAGTTGCAGAATCTTGTGTTTCTTGATTTGTACATGAATCATTTCTCTGGAAGTTTACCTGTGGAGATTGGTAACATCACAGTTCTTGAGCTTTTGGATGTTCATAACAACTACCTCAGTGGTGAGATTCCATCTCTTATTGGTGAACTTGAGAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGACAGGTGAAATCCCTTGGAGTTTTGGTAACTTGAGTTATTTGAACAAGCTCATACTCAACAATAATTTACTCACAGGTACAATACCAAAATCTGTTAGAAATTTGCAGAAGCTAACACTTTTGGATTTGAGTTATAACAGCTTATCTGGTTGCATACCCTCAGAGATTGGTTATGTTACAAGTTTAACCATAAGTTTGGATTTGAGCTCAAATGCATTCATAGGAGAAATTCCAGATTCAATTTCTGCTCTGACACAGTTACAATCACTTGATCTTTCTCATAATATGCTTTATGGAGGAATTAAGGTTCTTGGCTCTCTTACTAGTCTCACTTCTCTTAATATCACCTACAACAATTTTTCAGGTCCTATTCCAGTAACACCATTCTTCAAAACTCTTACTTCTAGTTCATATCTTCAGAACATTCATCTTTGTCAGTCCATTGATGGAACTACATGTTCTTCAAATCTAGTTCAAAAAAACGGTTTAAAATCTGCAAAAACTATAGCTATGATCACGATTATTCTAGCTTCGGTTACGATAATTGTCATTGCGTCATGGGTTCTAGTAACCCGTAGTAATCATCGGTACAGCGTTGAAAAGGCTTTGAGGACATCAGGTTCTACATCAGGAGCTGAAGATTTCTCATATCCTTGGACTTTTATACCATTTCAGAAACTTAACTTCAGCATAGATAATATCTTGGATTGCCTGAAAGATGAAAATGTGATTGGAAAAGGTTGTTCTGGTGTTGTGTATAAAGCTGAGATGCCACATGGAGAGGTGATAGCAGTGAAGAAGCTATGGAAAACAAACAAAGGTGATGAAATGGTGGATTCTTTTGCTGCTGAGATTCAGATACTCGGTTACATTCGACATAGGAACATTGTGAGGCTCATAGGTTATTGTTCAAATGGGAGTGTTAAGCTTCTTCTATATAACTTTATCTCAAATGGTAATCTAAGACAGCTTTTGCAAGAGAACAGGAACttggattgggaaactaggtacaagattgctgttggctcagctcagggtttagcttaccttcatcatgattgtgtcccaacaattcttcatagagatgttaagtgcaataacatacttttagattccagatttgaggcttatattgcagactttggtcttgcaaagCTAATGAATTCACCAAATTATCATCATGCAATGTCTAGAGTTGCTGGTTCCTATGGCTATATTGCCCCAGAGTATGGCTACACCATGAACATAACAGAGAAGAGTGATGTCTACAGCTTTGGAGTGGTTTTACTCGAGATACTAAGTGGGAGAAGTGCTGTTGAATCCCATCATGTTGGAGATGGACAACACATAGTTGAATGGGTGAAGAAGAAAATGGCAAGCTTTGAACCAGCTGTTTCAATACTTGATACAAAGCTTCAAAGTTTACCAGATCAAATGGTGCAAGAGATGCTTCAAGCACTTGGAATTGCTATGTTTTGTGTGAATTCTTCACCAGCTGAGAGGCCTACTATGAAGGAAGTTGTTGCACTATTGATGGAGGTGAAGAGTCAGCCTCATGAGGAGATGGGGAAAACTTCTCAACCTTTGATAAAGCAGTCATCAACTCAAAGCTGA 3243 0.3565 MENNVVVPFSVTTSFLFLLLSFFSLTNIQQLTCLSPDGQALLSLVSSSSVLSSWNPSTSTPCSWKGITCSPQGRVISLSIPDTCLNLSSLPPQLSSLSMLQLLNLSSTNISGSIPPSFGQLSHLQLLDFSSNSLTGSIPDELGNLSSLQFLFLNSNRLTGTIPPQLSNLTSLEVLCLQDNLINGSIPSQLGSLKSLQQFRIGGNPFLSGKIPSQLGQLTNLTTFGAAATGLSGSIPSTFGNLINLQTLALYDTEISGSIPKELGLCSELRNLYLHMNKLTGSIPFQFGKLQKLTSLLLWGNALTGEIPPEISNCSSLVIFDASSNDLSGEIPEDFGKLVVLEQLHLSDNSLTGEIPWQLSNCTSLATIQLDKNQLSGTIPYQVGELKLLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGFIPEEIFSLQKLSKLLLLGNSLTGRLPSSVANCQSLVRLRVGENQLSGQIPKEIGKLQNLVFLDLYMNHFSGSLPVEIGNITVLELLDVHNNYLSGEIPSLIGELENLEQLDLSRNSLTGEIPWSFGNLSYLNKLILNNNLLTGTIPKSVRNLQKLTLLDLSYNSLSGCIPSEIGYVTSLTISLDLSSNAFIGEIPDSISALTQLQSLDLSHNMLYGGIKVLGSLTSLTSLNITYNNFSGPIPVTPFFKTLTSSSYLQNIHLCQSIDGTTCSSNLVQKNGLKSAKTIAMITIILASVTIIVIASWVLVTRSNHRYSVEKALRTSGSTSGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPHGEVIAVKKLWKTNKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNFISNGNLRQLLQENRNLDWETRYKIAVGSAQGLAYLHHDCVPTILHRDVKCNNILLDSRFEAYIADFGLAKLMNSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSFGVVLLEILSGRSAVESHHVGDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQMVQEMLQALGIAMFCVNSSPAERPTMKEVVALLMEVKSQPHEEMGKTSQPLIKQSSTQS 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01085 1080 Pfam Leucine Rich Repeat 532 554 IPR001611 GO:0005515
Car04g01085 1080 Gene3D Transferase(Phosphotransferase) domain 1 859 1077 - -
Car04g01085 1080 ProSiteProfiles Protein kinase domain profile. 781 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01085 1080 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Car04g01085 1080 PRINTS Leucine-rich repeat signature 533 546 - -
Car04g01085 1080 PRINTS Leucine-rich repeat signature 627 640 - -
Car04g01085 1080 MobiDBLite consensus disorder prediction 1064 1080 - -
Car04g01085 1080 Gene3D Ribonuclease Inhibitor 30 86 IPR032675 -
Car04g01085 1080 SMART LRR_sd22_2 578 604 - -
Car04g01085 1080 SMART LRR_sd22_2 145 171 - -
Car04g01085 1080 SMART LRR_sd22_2 530 559 - -
Car04g01085 1080 SMART LRR_sd22_2 627 652 - -
Car04g01085 1080 SMART LRR_sd22_2 121 142 - -
Car04g01085 1080 Pfam Leucine rich repeat 389 447 IPR001611 GO:0005515
Car04g01085 1080 Pfam Leucine rich repeat 100 158 IPR001611 GO:0005515
Car04g01085 1080 SMART LRR_typ_2 578 602 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 627 654 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 169 193 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 530 553 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 290 314 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 338 362 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 410 434 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 482 506 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 145 168 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 97 120 IPR003591 -
Car04g01085 1080 SMART LRR_typ_2 121 144 IPR003591 -
Car04g01085 1080 SMART serkin_6 781 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01085 1080 Pfam Protein kinase domain 783 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01085 1080 PANTHER - 11 1076 - -
Car04g01085 1080 SUPERFAMILY L domain-like 379 694 - -
Car04g01085 1080 SUPERFAMILY Protein kinase-like (PK-like) 764 1054 IPR011009 -
Car04g01085 1080 SUPERFAMILY L domain-like 50 399 - -
Car04g01085 1080 ProSitePatterns Protein kinases ATP-binding region signature. 787 810 IPR017441 GO:0005524
Car04g01085 1080 MobiDBLite consensus disorder prediction 1060 1080 - -
Car04g01085 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672|GO:0006468
Car04g01085 1080 Gene3D Phosphorylase Kinase; domain 1 753 858 - -
Car04g01085 1080 PANTHER UNNAMED PRODUCT 11 1076 - -
Car04g01085 1080 Gene3D Ribonuclease Inhibitor 228 437 IPR032675 -
Car04g01085 1080 Gene3D Ribonuclease Inhibitor 87 227 IPR032675 -
Car04g01085 1080 Gene3D Ribonuclease Inhibitor 438 699 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01085 Car-Chr4 11005526 11010246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01085 31 1074 Receptor kinase-like Gene Family AT5G56040 44.779 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car04g01085 Pkinase 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01085 - - gmx:100819611 1771.52