Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01078 ATGGCGGCGGCGATTTCTTCACCAATTGTTCAGTCTGTGACTCCGGTGGCCCCGGCTACGCCACCATTGACCGGAGGACCTTTTGCGAATGCATCTCTCTACGTTGGCGATCTCGAAGGAAGTGTTAACGAGGGACAACTTTATGATCTGTTCAGCCAGGTCGCTCAGGTTGTTTCGATTAGGGTTTGCAGGGATCAGACTAGGCGATCCTCTCTTGGTTACGCTTATGTCAACTTTACCAACGCTCCAGATGCGGCCAATGCCAAGGAACTTCTGAACTTCACTCCTTTGAATGGGAAGCCCATTCGTATCATGTTTTCTCAACGAGATCCAAGTGTTCGCAAGAGTGGATCTGGCAATGTGTTCATTAAGAACCTGGACACATCAATTGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGCTCTGTACTTTCTTGTAAGGTGGCTCTTGACAGCAGTGGCCAATCAAGAGGGTACGGTTTTGTTCAGTATGACAATGAAGAAGCTGCACAGTGTGCCATCGATAAGTTGAATGGCATGCTGATAAATGATAAACAAGTCTATGTTGGACTTTTTGTTCGCCACCAGGAAAGGGCTAGGACCAATGGATCACCCAAGTTCACTAATGTTTATGTGAAAAATCTTTCTGAAACATTAGCTGATGAAGACCTGAAGCAGCTATTTGCCCCCTTTGGCACGATAACTAGTGCAACAGTTATGAAAGATGCAAATGGGAAGTCTAGATGCTTTGGTTTCGTGAATTTTCAGAGTCCAGATTCAGCAGCTGCTGCTGTTGAGAGGTTAAATGGAACTACTATCAATGATGACAAGGTTTTATTTGTGGGGAGAGCCCAGAGGAAATCAGAAAGAGAGCATGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATCAGCAGATACGAGAAATTACAAGGTGCCAATTTGTACTTGAAAAACCTTGATGATGGTTTTAGTGATGAAAAGTTGAAGGACCTATTTTCTGAGTTTGGAACTATTACATCTTGCAAGGTGATGTTGGACTCCCATGGTCATAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTACTCCCGAGGAAGCAAATAAAGCATTGAATGAAATGAATGGGAAGCTGGTTGGAAGAAAGCCTCTGTTTGTTGCTGTGGCCCAGCGGAAAGACGAAAGGAAGGCTCGGTTGCAGGCCCATTTTGCTCAAATTCGTGCACCTGCTGGAATGGCACCGCTACCTGCAGGAATTCCTGGATACCATTCTGGGGCACCAAGACTTGCTCCTCAGCAGTTGTATTTTGGTCAAGGCACACCTAGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAGCAAATGTTGCCTGGAATGCGGCCCGGTGTTGCTCCAAATTTTGTTATGCCATACCAACTCCAAAGACAAGGTCAACCTGGGCAAAGGATGGGTGTTCGGAGAAATGGAAACCTCCAACACGTGCAGCCAAACCAAATGGCACATCGCAACTCCAACCAAGGGTTTAGATACATGGCCAACAATCGAAATGGCATGGACCCATCTGGAGTTCCTCAAGGTCTAGTGGGTCAAATGTTGCCCATGAACTATGATGGTTCTGGAGTTACCGCAGCTCCAATTGATAGTCAACGTCCAGGGTCTACCACACTGGCCTCAGCTTTAGCTTCTGCAACCCCAGAAAATCAGCGTATGATGTTGGGTGAGCATCTTTATCCCCTTGTGGACCGTCTTACACCAAACCAACATACAGCAAAGGTGACAGGGATGTTGCTTGAAATGGACCAGTCAGAGGTAATTCATCTTATTGAATCTCCAGAGGACCTGAAAATAAAGGTCTCTGAGGCATTACAGGTCCTTCATGAAGCTGCATCAGGATCTGAAGTCGGTGATCAGCTTGGTTCCTTGTCATTGAACGAATGA 1944 0.4619 MAAAISSPIVQSVTPVAPATPPLTGGPFANASLYVGDLEGSVNEGQLYDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAPDAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDNKALHDTFAAFGSVLSCKVALDSSGQSRGYGFVQYDNEEAAQCAIDKLNGMLINDKQVYVGLFVRHQERARTNGSPKFTNVYVKNLSETLADEDLKQLFAPFGTITSATVMKDANGKSRCFGFVNFQSPDSAAAAVERLNGTTINDDKVLFVGRAQRKSEREHELKAKFEQERISRYEKLQGANLYLKNLDDGFSDEKLKDLFSEFGTITSCKVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKDERKARLQAHFAQIRAPAGMAPLPAGIPGYHSGAPRLAPQQLYFGQGTPSFIPPQPAGFGFQQQMLPGMRPGVAPNFVMPYQLQRQGQPGQRMGVRRNGNLQHVQPNQMAHRNSNQGFRYMANNRNGMDPSGVPQGLVGQMLPMNYDGSGVTAAPIDSQRPGSTTLASALASATPENQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEALQVLHEAASGSEVGDQLGSLSLNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01078 647 Gene3D - 553 632 - -
Car04g01078 647 SMART rrm1_1 211 284 IPR000504 GO:0003723
Car04g01078 647 SMART rrm1_1 315 387 IPR000504 GO:0003723
Car04g01078 647 SMART rrm1_1 120 192 IPR000504 GO:0003723
Car04g01078 647 SMART rrm1_1 32 105 IPR000504 GO:0003723
Car04g01078 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 632 IPR002004 GO:0003723
Car04g01078 647 Gene3D - 120 193 IPR012677 -
Car04g01078 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Car04g01078 647 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 627 IPR006515 GO:0003723
Car04g01078 647 SMART rrm2_1 120 192 IPR003954 GO:0003676
Car04g01078 647 SMART rrm2_1 32 105 IPR003954 GO:0003676
Car04g01078 647 SMART rrm2_1 315 387 IPR003954 GO:0003676
Car04g01078 647 SMART rrm2_1 211 283 IPR003954 GO:0003676
Car04g01078 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 279 IPR000504 GO:0003723
Car04g01078 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Car04g01078 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Car04g01078 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Car04g01078 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Car04g01078 647 SUPERFAMILY RNA-binding domain, RBD 209 395 IPR035979 GO:0003676
Car04g01078 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Car04g01078 647 Gene3D - 26 119 IPR012677 -
Car04g01078 647 PANTHER RNA BINDING PROTEIN 26 635 - -
Car04g01078 647 SUPERFAMILY RNA-binding domain, RBD 31 198 IPR035979 GO:0003676
Car04g01078 647 Gene3D - 295 400 IPR012677 -
Car04g01078 647 Gene3D - 195 294 IPR012677 -
Car04g01078 647 PANTHER POLYADENYLATE-BINDING PROTEIN 26 635 - -
Car04g01078 647 SUPERFAMILY PABC (PABP) domain 496 632 IPR036053 GO:0003723
Car04g01078 647 CDD RRM3_I_PABPs 209 289 - -
Car04g01078 647 CDD RRM4_I_PABPs 313 391 - -
Car04g01078 647 CDD RRM1_I_PABPs 32 111 - -
Car04g01078 647 Pfam Poly-adenylate binding protein, unique domain 562 627 IPR002004 GO:0003723
Car04g01078 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Car04g01078 647 SMART poly_2 566 630 IPR002004 GO:0003723
Car04g01078 647 CDD RRM2_I_PABPs 117 192 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01078 Car-Chr4 10949084 10953590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01078 1 627 Eukaryotic Initiation Factors Gene Family AT1G22760 57.430 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01078 K13126 - gmx:100783163 1082.4