Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01072 ATGGGTGCGGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCCGGTTTTCGGTTCCATCCCACAGATGAGGAGCTGGTGATGTACTTTCTGAAAAGAAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTGATTTGTGAAACTGACGTGTACAAGTGGGATCCTGAGGATTTGCCTGGACAATCTTTTCTGAAAACTGGAGATAGGGTATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAATGGTGCGAGGTCTAACCGAGCAACAAGGCATGGCTACTGGAAAGCAACAGGAAAGGATCGAAATATCATATTCAATTCTCGTTCTGTTGGAGTAAAAAAGACACTAGTTTTCTATGTAGGCAGAGCTCCTAATGGTGAGCGAACTGACTGGGTTATGCATGAATATACCATGGATGAAGAGGAGCTTAAAAGATGCCGTGATGTTAAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAATATGGTGCACCATTTAAAGAAGAAGATTGGGCAGATGATGATGATGTAGCTTTTAAAATTAATTCACCTGAGAAGGAGGCTCCAAATGCTGTTATTGATCCTCTAAATGGTCAGATGCAGCCGTTGTTTGACGATGAAATTGATGAAATCATTAAAGAGATTTTTGATGTTGAGCCTGTCCCTGACCAGCAATATGTGAATGGATATGTTGACTTTCCTCAGGTTGTTGGTGAAGAAACACAAAGTATGATCCTGGGTCAGTTCTCTGAGGCCGTGATATTCCCGGAGGCAAGTGGAGAATTACAATCTTGCAGTCAGTATTATGATGTGCAGCCCAGCTTTGACTTCAATCAATCAATTGCTTCTCCCTTGCATTTTTCTGAATCACCTGAGCTCGCTTCTGCTCCCGACATTGAAAGTGACTTTCAAGAGGACGGCTTCTTGGAAATCAACGACCTCATTGACACTGAACCTACATTTTCAAATACCGAAAAGCCTGTGGAGAACCTCCAATTTGAAGATGGGTTAAGTGAATTTGATCTGCACCAAGATGGAGAGATGCTTCTCCGTGAGCTGGGGCCTGTTACCGGCGAACCAGTTTCTCGTGCATATATGAATAACATTGGCAACAATATTGAAAATCAGAGTTACCAGCTGACGCCTTATCCAGAAGACACCAATCAAATGGTTGATGAATTCTGGATGCATTTTGAAAGAAATACCCTGAGTCCAGCCGAAGGCTATGCTGATTCTTTCTCTCTAACAAATCCAGGTGTTGTTTGTGATTCTGTCAGCTTTCCTTCTGAAAGCACTGAAAATCGAAGAAGCACTGTGGAAGATGTTAGTACTACAAGTAGATTCTCCTCTGCTCTTTGGGCTTTTGTTGAGTCGATACCTACCACTCCTGCATCAGCTGCTGAAAATCCTTTGGTGGGTCGGGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAAGATCAAGCCAACCAATATTGCTGCAGACAGAGGAGCACGAATCTTTGATACATCATACACACCGAAGGGAATACACATGTCGATGAATAAGGTGGACTATTAA 1614 0.4269 MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYFLKRKICGKKLKFNVICETDVYKWDPEDLPGQSFLKTGDRVWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNIIFNSRSVGVKKTLVFYVGRAPNGERTDWVMHEYTMDEEELKRCRDVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEDWADDDDVAFKINSPEKEAPNAVIDPLNGQMQPLFDDEIDEIIKEIFDVEPVPDQQYVNGYVDFPQVVGEETQSMILGQFSEAVIFPEASGELQSCSQYYDVQPSFDFNQSIASPLHFSESPELASAPDIESDFQEDGFLEINDLIDTEPTFSNTEKPVENLQFEDGLSEFDLHQDGEMLLRELGPVTGEPVSRAYMNNIGNNIENQSYQLTPYPEDTNQMVDEFWMHFERNTLSPAEGYADSFSLTNPGVVCDSVSFPSESTENRRSTVEDVSTTSRFSSALWAFVESIPTTPASAAENPLVGRALNRMSSFSRVKIKPTNIAADRGARIFDTSYTPKGIHMSMNKVDY 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01072 537 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Car04g01072 537 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Car04g01072 537 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Car04g01072 537 PANTHER NAC TRANSCRIPTION FACTORS 2 15 527 - -
Car04g01072 537 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Car04g01072 537 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01072 Car-Chr4 10888184 10894125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01072 4 504 NAC Transcription Factor Family AT1G34190 44.630 1.12e-123 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car04g01072 NAM 2.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01072 - - mtr:MTR_1g097300 806.594