Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01071 ATGGCTTCTTCTCAGTCTCAGCATCGCTGTGTCTTCGTTGGAAATATACCGTACGATGCAACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGCCCTGTAGTCTCGTTCAGATTAGTTATTGATAGAGAAACTGGGAAACCAAAAGGTTATGGGTTTTGTGAGTATAAGGATGAAGAAACAGCTTTAAGTGCTCGTCGCAATCTTCAGGGCTATGACATTAATGGGCGCCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAAAGATCAGGGACGTGGGGGACCTGGAATGACACCAAATGTTGACGCTCAGAAACAAGTAGTCATCCCAGCTGTTCAAGGGGAATCTTCTCAACATCAACCTATCGGTCTTCATATTGCCATATCAGCTGCAGCTGTCATGACTGCAGCTCTAGGTGGTTCTCAGTCTGCCATCCAGTCAAATCAAAATGGTTTGCAGAATCAGTCAGCATTGGCAAATGATCCTTTAACTTTGCATATGGCCAAAATGTCCAGGAGCCAGCTGACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACACAACAAGGATTTGGCTCGCCAGTTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTCAAGTGTTGCAAATGCCAAATCTTAAACTAGTTTCAGATCAAACCTCACACTCTTCAATGAATGAAGGCCACCTCGGTCAGCCATCAATGGTTCAAACTGTGGTTAGCCTACCTCCCTATGGACAGAGCAAATTGCAGCCTGGCTTGACACCTTATATTCAAGAAGGCCAAGTCAGCACTATACCTCATAACCCTTTGGCTCCTAATCAATTAACCTCAAATCCAAGGCCTCCAATGCAGCCTCGAATTCCCCTTCAACATCATCCAAGCAACCATTTTGTACAGCTCGGAACAGGGCAGTCTAATTTAATGCTTCCTTCTGTACGTCCCCCAGCTTTGGGAAGTTTGTCTGTTAGGCCTCCAATTCAATCAGCAAGTTCGACTGCTTTGAACCCGCAAATGCATGCCTCGTTCCTACAGCATCCAGTACGTGTTGGAAGCTCAACTATCTCACATAATATTCAAATGGTTGGCCCCTCCACGTCATCTGGTATTTCTCAGTTATTTAGTAAGGAAGGTGATAGATCTTCCAAAGTTCTTGAGGATTGGGCCACGAGTAGTAGTAAATATTCAAACATGTCTTTGGGGGTAGAGAATACAAGCATGGTTCGTGATATTCCAGAATCCCTTACTCGCCCATCAAAGCTCACTAGATTGAATGATGGAAGGGGCGCCTCTCTTTCTGCTGGGACTTCAAACATGCCTGTCTCCAACGGATCATCCTATGTTCCTAGAAGTACCTCTTTATCTGTACCTGCAGTTCCTAAAGCAGAAGTACGGCACACTGATCAACAATCTTCACAGTCGCAGCAGCTTCCATCTGATGTGGAGTCTGTTTTACTGCAACAAGTGTTGAATCTAACACCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAACAGGTCATGCAGCTGCAACAAGCTCTTAAGCGAGATCAGATGCAGCTCTCATAA 1635 0.4514 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYDINGRQLRVDFAENDKGTDRNKDQGRGGPGMTPNVDAQKQVVIPAVQGESSQHQPIGLHIAISAAAVMTAALGGSQSAIQSNQNGLQNQSALANDPLTLHMAKMSRSQLTEIISELKGMATHNKDLARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLKLVSDQTSHSSMNEGHLGQPSMVQTVVSLPPYGQSKLQPGLTPYIQEGQVSTIPHNPLAPNQLTSNPRPPMQPRIPLQHHPSNHFVQLGTGQSNLMLPSVRPPALGSLSVRPPIQSASSTALNPQMHASFLQHPVRVGSSTISHNIQMVGPSTSSGISQLFSKEGDRSSKVLEDWATSSSKYSNMSLGVENTSMVRDIPESLTRPSKLTRLNDGRGASLSAGTSNMPVSNGSSYVPRSTSLSVPAVPKAEVRHTDQQSSQSQQLPSDVESVLLQQVLNLTPEQLSSLPPEQQQQVMQLQQALKRDQMQLS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01071 544 Pfam Hinge domain of cleavage stimulation factor subunit 2 161 230 IPR025742 -
Car04g01071 544 MobiDBLite consensus disorder prediction 430 473 - -
Car04g01071 544 Gene3D - 158 232 - -
Car04g01071 544 MobiDBLite consensus disorder prediction 486 500 - -
Car04g01071 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Car04g01071 544 Pfam Transcription termination and cleavage factor C-terminal 506 538 IPR026896 GO:0031124
Car04g01071 544 Gene3D - 500 540 IPR038192 -
Car04g01071 544 MobiDBLite consensus disorder prediction 81 96 - -
Car04g01071 544 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Car04g01071 544 MobiDBLite consensus disorder prediction 481 500 - -
Car04g01071 544 Gene3D - 1 113 IPR012677 -
Car04g01071 544 MobiDBLite consensus disorder prediction 450 473 - -
Car04g01071 544 CDD RRM_CSTF2_CSTF2T 11 85 - -
Car04g01071 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Car04g01071 544 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 539 - -
Car04g01071 544 MobiDBLite consensus disorder prediction 81 109 - -
Car04g01071 544 SMART rrm1_1 10 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01071 Car-Chr4 10878610 10884930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01071 11 150 Eukaryotic Initiation Factors Gene Family AT1G71770 28.369 1.90e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01071 K14407 - gmx:100794399 781.171