Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01050 ATGGGTTTTTCGAATCTTTGCTTGTTTTTCTTCTCTCTCTTGAGTTTGTGTGCTATGGCGGCTTCTAAGGTTGTGCTGATTGGGAACAACATCACTCTCTCATTCGATGATATTGAAGCTAATTTCGCTCCGTCGGTTAAAGGGTCTGGAGAATATGGAGTCTTATTCTTGGCAGAGCCACTTGATGCATGTACAGAACTTACAAATAAAGCTAAACAACTTTCGAATGTTAGTTCACCTTTTGTTTTGATGATTAGAGGGGGGTGTAGCTTCGAAGAAAAGGTTAGAATGGCACAAAATGCTGGCTACACAGCTGCAATTGTCTATGACAATGAAGATGGTGGCGTCCTGGTTGCAATGGCAGGaaattctgctggtataagaatacacgcggtatttgtatcaaaagcttcgggtgaaatacttcataaatacactggtttgactaatgtggaaacgtggctcattccaacttttgaaaactcagcatggtctatcatgGCAATTTCATTTATTTCCCTGCTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGCTTCTCATGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATTTTCACTTCTGCTTTGGAAGATAACTGTACATCAAGAACATGTGCTATCTGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTTCCCTGTTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCGTGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACGGGTTTGTCTGATCCACCACCTTCAGAATCCACACCTCTACTGTCATCGACTCCGTCGTCCGTGGCATCATCTGTCCTGTCTTCTATGAGGTCATCATATGCTTCGTCTTCTGCAATACAAATCATTTCACAGTCGCCGTCTGTTTCTCAAAACCACTCTTTAGCTAGCAGTACTCCTTTCATTCAACCATCTCTAAGGTCTTACCGTCAATCCCCATCCCTAAGTGTCAGCCGTAGCTCCGTAGATCTTAGAAATGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCACGTTCCATGGGTTATCCATCTTTGTCATCTCTTAACTCAAGGTACTTGTCTTCACACATTCCAAGTCCAAGTAATGCCTCAGTAAGTTTCATGATCGGTTCATCCAGTCATCATCAGCATCCACTCCGTTATAGTGAGTCAGCCGCAAGCTTCTCATCGTTTGCGTCGGCCAACTCCCTTCCGGAATGTTGA 1329 0.4003 MGFSNLCLFFFSLLSLCAMAASKVVLIGNNITLSFDDIEANFAPSVKGSGEYGVLFLAEPLDACTELTNKAKQLSNVSSPFVLMIRGGCSFEEKVRMAQNAGYTAAIVYDNEDGGVLVAMAGNSAGIRIHAVFVSKASGEILHKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLSDPPPSESTPLLSSTPSSVASSVLSSMRSSYASSSAIQIISQSPSVSQNHSLASSTPFIQPSLRSYRQSPSLSVSRSSVDLRNASQRSLASHMNSPRSMGYPSLSSLNSRYLSSHIPSPSNASVSFMIGSSSHHQHPLRYSESAASFSSFASANSLPEC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01050 442 CDD PA_C_RZF_like 13 163 IPR044744 -
Car04g01050 442 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 375 - -
Car04g01050 442 Pfam Ring finger domain 233 276 IPR001841 -
Car04g01050 442 MobiDBLite consensus disorder prediction 357 383 - -
Car04g01050 442 Gene3D - 20 153 - -
Car04g01050 442 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Car04g01050 442 SUPERFAMILY RING/U-box 223 288 - -
Car04g01050 442 Pfam PA domain 62 142 IPR003137 -
Car04g01050 442 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 375 - -
Car04g01050 442 CDD mRING-H2-C3H2C2D_ZSWM2 233 276 - -
Car04g01050 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 281 IPR013083 -
Car04g01050 442 SUPERFAMILY PA domain 76 144 IPR046450 -
Car04g01050 442 SMART ring_2 234 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01050 Car-Chr4 10662876 10667553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01050 21 441 C3H Transcription Factor Family AT1G22670 49.533 1.09e-114 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01050 K15692 - gmx:100791248 629.787