Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01045 ATGCAGAAACATAGTTTTGGATCAAAATCATCATCAAAATGCACTGCTGTGTTACCCTATCAAACCCCAAGATTAAGGGATCATTACCTTCTTGGGAAGAAACTTGGGCAAGGACAATTTGGGACAACATATCTTTGCACACACAAATCATCAGGGAAACTTTATGCATGCAAATCAATTCCAAAGAGGAAGCTTTTGTGTCAAGATGATTATGATGATGTGTGGAGAGAGATTCAGATCATGCACCATTTATCTGAACACCCAAATGTGGTTCAGATTCAAGGGACTTATGAGGATTCTGTGTTTGTGCATTTGGTGATGGAGTTGTGTGCTGGTGGAGAGCTTTTTGATAGGATTATTCAAAAGGGTCATTATAGTGAGAGAGAGGCTGCAAAGTTGATTAAGACTATTGTTAGTGTGGTTGAGGCTTGTCATTCTCTTGGTGTCATGCATAGGGATCTTAAGCCTGAGAATTTCTTGTTTGATACTCCTGGTGAAGATGCTCAAATGAAGGCTACAGATTTTGGTCTCTCTGTGTTCTACAAGCCAGGACAAACCTTTCACGACGTAGTTGGAAGTCCCTACTATGTTGCCCCTGAGGTATTATGTAAGCTATATGGACCAGAAGTTGATGTTTGGAGTGCTGGTGTTATCCTATACATATTACTGAGTGGTGTCCCACCTTTTTGGGCCGAAACCGAAGCGGGAATTTTCAGACAGATTTTACATGGAGATCTTGATTTTGTTTCGGAACCATGGCCAAGTATCTCAGAAAGCGCTAAAGATTTGGTAAAACAGATGCTGGATAGGGACCCTAGGAAAAGAATCTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATAAAGTTGCACCTGACCAACCTTTGGATTCTGCTGTTTTGACACGCCTAAAGCATTTCTCAGCGATGAATAAACTTAAGAAGATGGCACTACGAGTGATAGCAGAAAGACTTTCGGAGGAAGAAATAGGCGGGTTAAAAGAGTTATTCAAAATGATTGACACTGACAACAGCGGAACAATCACTTATGAGGAACTCAAAGATGGTCTAAAAAGAGTTGGCTCTAATCTCATGGAATCCGAAATTAAATCCCTTATGGACGCGGCTGATATAGACAATAATGGAACAATAGACTACGGTGAATTTCTCGCGGCTACACTGCACTTGAATAAGATGGAAAGAGAAGAGAATTTGGTTGCAGCTTTTGCCTATTTTGATAAAGACGGTAGTGGCTATATCACCATTGACGAGCTTCAACAAGCTTGTAAAGACTTTGGTCTTGGTGAAGTACATCTCGATGACATCATCAAAGAGATTGATCAAGATAATGATGGGAGAATTGATTATGCGGAGTTTGTGGCAATGATGAAAAAAGGCGATGCAGATATTGTTAGTAGGAGCAGAACCATGAAAGGCAATTTGAATTTCAGTATTGCAGATGCATTTGGAGTGAAAGACTCCTCTTGA 1494 0.405 MQKHSFGSKSSSKCTAVLPYQTPRLRDHYLLGKKLGQGQFGTTYLCTHKSSGKLYACKSIPKRKLLCQDDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAAKLIKTIVSVVEACHSLGVMHRDLKPENFLFDTPGEDAQMKATDFGLSVFYKPGQTFHDVVGSPYYVAPEVLCKLYGPEVDVWSAGVILYILLSGVPPFWAETEAGIFRQILHGDLDFVSEPWPSISESAKDLVKQMLDRDPRKRISAHEVLCHPWIVDDKVAPDQPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITYEELKDGLKRVGSNLMESEIKSLMDAADIDNNGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQACKDFGLGEVHLDDIIKEIDQDNDGRIDYAEFVAMMKKGDADIVSRSRTMKGNLNFSIADAFGVKDSS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01045 497 SUPERFAMILY EF-hand 326 466 IPR011992 -
Car04g01045 497 SMART serkin_6 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01045 497 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 479 - -
Car04g01045 497 ProSitePatterns EF-hand calcium-binding domain. 343 355 IPR018247 -
Car04g01045 497 Pfam EF-hand domain pair 405 466 IPR002048 GO:0005509
Car04g01045 497 Pfam EF-hand domain pair 335 395 IPR002048 GO:0005509
Car04g01045 497 Gene3D - 295 470 - -
Car04g01045 497 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Car04g01045 497 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Car04g01045 497 Gene3D Transferase(Phosphotransferase) domain 1 115 294 - -
Car04g01045 497 SMART efh_1 440 468 IPR002048 GO:0005509
Car04g01045 497 SMART efh_1 406 434 IPR002048 GO:0005509
Car04g01045 497 SMART efh_1 370 398 IPR002048 GO:0005509
Car04g01045 497 SMART efh_1 334 362 IPR002048 GO:0005509
Car04g01045 497 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Car04g01045 497 ProSiteProfiles EF-hand calcium-binding domain profile. 440 471 IPR002048 GO:0005509
Car04g01045 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Car04g01045 497 Pfam Protein kinase domain 31 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01045 497 ProSiteProfiles Protein kinase domain profile. 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01045 497 PANTHER BNAA09G05220D PROTEIN 16 479 - -
Car04g01045 497 SUPERFAMILY Protein kinase-like (PK-like) 25 298 IPR011009 -
Car04g01045 497 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Car04g01045 497 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Car04g01045 497 CDD STKc_CAMK 28 286 - -
Car04g01045 497 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Car04g01045 497 ProSiteProfiles EF-hand calcium-binding domain profile. 330 365 IPR002048 GO:0005509
Car04g01045 497 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01045 Car-Chr4 10587405 10591113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01045 15 497 EF-hand Containing Proteins AT4G09570 82.402 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Car04g01045 Pkinase 8.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01045 K13412 - gmx:547887 916.761