Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01042 ATGGATATGGAATCATGTGTACCACCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTGGGGTATTATCTGAACAGGAAGATTAACTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTATAAAATTGAACCATGGGACATACAAGATAAATGCAAGCTAGGATATGAGCAACAGAATGAGTGGTATTTTTTCAGCCACAAAGATAAAAAGTATCCAACAGGAACAAGAACTAACAGGGCAACTGCTGCTGGATTTTGGAAAGCAACTGGAAGGGATAAAGCTGTTACTTCAAAAAACAGAATCATTGGAATGAGGAAGACTCTTGTTTTTTACAAAGGACGTGCCCCTAATGGAAGGAAAACTGACTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGCCCCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTTAGAAAGCCTAGTCCAAGCCACAGGCCAGGTTTTGAACCATGGTgtagtagtagtagtagtCAACATCAACATCAACATCAACAACCACACTATTTCAGAGATGAAACCTATTCAACAACAAGACCCTTATCAATAACAGATATTTTTCATGAAGGTACAAGTTATAGTCACCCTTTTAGCACAGAACAGCAACAGTTTCTATCAAACCAAACACTTATTATGGACAAAAACCTCATTGAACTTCCACAACTAGAAGAATGTAACCAATTACAACATCACAATAATGAAGATTGCAATGAAGAAAGGAGCAATAACAATATAGTAGATTGGAAAAGCTTGGACAACTTGTTCACTTCACAATTTACAGATACAACAACAGCTAATTACTTTTCACATCAAAACTTGCCATTGATGATACCTCATAGTCATCATGAGCTGCAATCTTCAAATCAAGCTAATCATATCTTAGGATGCTTTCCTGATTCATAA 951 0.3649 MDMESCVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDKCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHAPPQEEGWVVCRAFRKPSPSHRPGFEPWCSSSSSQHQHQHQQPHYFRDETYSTTRPLSITDIFHEGTSYSHPFSTEQQQFLSNQTLIMDKNLIELPQLEECNQLQHHNNEDCNEERSNNNIVDWKSLDNLFTSQFTDTTTANYFSHQNLPLMIPHSHHELQSSNQANHILGCFPDS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01042 316 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Car04g01042 316 MobiDBLite consensus disorder prediction 165 189 - -
Car04g01042 316 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 5 290 - -
Car04g01042 316 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 290 - -
Car04g01042 316 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Car04g01042 316 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Car04g01042 316 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01042 Car-Chr4 10572706 10574616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01042 3 316 NAC Transcription Factor Family AT1G71930 55.988 1.32e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car04g01042 NAM 3.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01042 - - gmx:100811057 482.641