Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01032 ATGAATCCAATGGGAAGCTTGTGTGCTAACAACTGGGCAAGGTCCTCTTCCTTACTCCCTCATGGGAATGGAATACAGACAAATTTATGCTCAGATCCTCCCCCTTTCTATGGGGTCGGCATCGAAGCGCCTTTCAAAGAAATCAACCAACCCTCTCAAACTCAGTCTGTGATTCCGGGTGAATCTAACAAAGATATTAAGATCCCTGATCAGGAAACCGGTAAACTCCAAGATTGGGATCCGAGTGCGATGTTGAATAACCTTTCATTCCTGGAAGAAAAGATCCATCAGCTCCAGGGTCTAGTGCATTTGATTGTTAATAAGAAGTGTCTACCTTTTGAACAACCTCATGAACTTGTGACTCAAGAACAGCAACTTATCACAGCTGATCTCACATCGATTATCGTTCAGTTGATCTCTACTGCAGGTAGTCTTCTTCCTTCGGTTAGGCACACGCTTACAAACACAAGTCCATTGGTCGGACAGCTTAACCAGCTTCGCGGGATTAACCTTCCCTTTGGATCAGGTGCAAGTAACGGTATTCAGCCACAAAATAATAGTGGAAATAAATTGTTTGATCAGTCCATTCGGAATGATGTACCTAATAATAATTGTGATATGGAGCACAACCATAATATGGAAGAACATGAACATAAAGATGACGAAGATATGGACGAGGGAGAGAACCTTCCACCTGGTTCATATGAGATTTTACAACTCGAAAAAGAAGAAATCCTTGCACCTCACACACATTTCTGTACAATATGTGGCAAAGGGTTCAAGAGGGATGCAAATCTTCGCATGCACATGCGAGGTCATGGTGATGAGTACAAAACACCAGCAGCCCTTGCAAAACCGCATAAAGAAATTGGGTCTGAACCAAAGCTTATCAAAAGGTATTCATGCCCCTATGCCGGCTGCAAGCGTAACAAAGATCACAAAAAATTTCAGCCTCTGAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACACTTGCAGCAGATGCCACACAAAGAAGTTTTCAGTCATTGCAGATCTCAAGACTCATGAAAAGCACTGTGGCAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTATTCCAAGGCCATACACCGGCTATTCCTTTGGAAGATACAAAAGGACTTGCCGAGCCACATGATCGATGTGACACCAAAGAAAATAGCACTATCTTAGGGAGCATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGTTAATAACATCATGGATGTGAAAGGAAATATTGATGATCCTATCAATTGTTTCTCACCTTTGAACTTTGAAGGCTGTAACTTTGGTGGGTTTAATGAATTCTCCCAACCTCCATTTGAAGATTCAGAAAGCTCTTTCTCTTTTCTGATGTCGGGATCGTTTAATTATGCTCCCAAATCTGGTGGTGAATCGTGTTCTGACAATCTGTTGTAA 1515 0.4145 MNPMGSLCANNWARSSSLLPHGNGIQTNLCSDPPPFYGVGIEAPFKEINQPSQTQSVIPGESNKDIKIPDQETGKLQDWDPSAMLNNLSFLEEKIHQLQGLVHLIVNKKCLPFEQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTSPLVGQLNQLRGINLPFGSGASNGIQPQNNSGNKLFDQSIRNDVPNNNCDMEHNHNMEEHEHKDDEDMDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEIGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEDTKGLAEPHDRCDTKENSTILGSMNFCFGSNPSSENGVNNIMDVKGNIDDPINCFSPLNFEGCNFGGFNEFSQPPFEDSESSFSFLMSGSFNYAPKSGGESCSDNLL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01032 504 SUPERFAMILY beta-beta-alpha zinc fingers 249 276 IPR036236 -
Car04g01032 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 278 IPR013087 -
Car04g01032 504 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 9 487 IPR044300 GO:0010044|GO:0010447
Car04g01032 504 SMART c2h2final6 300 333 IPR013087 -
Car04g01032 504 SMART c2h2final6 251 273 IPR013087 -
Car04g01032 504 SMART c2h2final6 338 360 IPR013087 -
Car04g01032 504 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 9 487 - -
Car04g01032 504 Gene3D Classic Zinc Finger 235 305 - -
Car04g01032 504 ProSitePatterns Zinc finger C2H2 type domain signature. 253 273 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01032 Car-Chr4 10483971 10486771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01032 219 504 C2H2 Transcription Factor Family AT1G34370 71.233 2.46e-142 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g01032 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01032 - - gmx:100170687 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01032 04 10483971 10486771 Car04g01032 04 10483971 10486771 ECH