Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01027 ATGTCTCACAATGCAAATTGCTCCGTATACATTGGCAATCTAGATGAAAGGGTGACAGAAAGGGTCTTGTATGATGTATTAATTCAAGCCGGTCGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAAAGGGTTACGCCTTTGCAGAATATGAAACGGAGGAGATTGCAGACTATGCTGTCAGACTTTTCTCAGGCCTTGTAACACTGTACAAAAGAACACTGAAGTTTGCGATATCTGGAAAAGACAAAACTACCCCTAATGGTTCTACAACTACGACACCCACATCAAACTCTTCTCAACGACCAAGGCCTTACCCTGGGCCAATAAGTAGTTCAGATAATTTTCAGCATTCCACTAGGCAATCAATACCTGACCGATTCTCAGATCATGCAACAAATTATTCCCAAGTTCCTCTTTCTCGTACAACCGACCAATTGAGTGGGTATGGATCTCACTACAGTGGCAACCATTATGATTACAGTCGGAGAGCTTTTGGGGAGGCATTGGATAGTGTTAGCCGTTCTAGGTCACGCCGCCCTGATGGAATTAGCCCAATCTCTTACTCACCTTACGAATATTTTCAATAG 603 0.4295 MSHNANCSVYIGNLDERVTERVLYDVLIQAGRVVDLHIPKDKESEKPKGYAFAEYETEEIADYAVRLFSGLVTLYKRTLKFAISGKDKTTPNGSTTTTPTSNSSQRPRPYPGPISSSDNFQHSTRQSIPDRFSDHATNYSQVPLSRTTDQLSGYGSHYSGNHYDYSRRAFGEALDSVSRSRSRRPDGISPISYSPYEYFQ 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01027 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Car04g01027 200 SUPERFAMILY RNA-binding domain, RBD 5 81 IPR035979 GO:0003676
Car04g01027 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Car04g01027 200 SMART rrm1_1 8 82 IPR000504 GO:0003723
Car04g01027 200 PANTHER OS01G0876500 PROTEIN 1 196 - -
Car04g01027 200 MobiDBLite consensus disorder prediction 85 200 - -
Car04g01027 200 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 196 - -
Car04g01027 200 MobiDBLite consensus disorder prediction 85 159 - -
Car04g01027 200 Gene3D - 1 95 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01027 3 87 Eukaryotic Initiation Factors Gene Family AT1G49760 28.235 7.73e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01027 K12831 - gmx:100803118 297.36