Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01018 ATGATTGAGAATTTGTCTGATAAAAAAACCCTTATGTCAGTTCGCGAGTTAGCTAAGGGGATTACTTATACTGAACCTTTGCCTACTGGGTGGAAACCTCCTTTGCATATAAGAAGGATGTCTAAAAAAGATTGCGATTTGATTCAGAAACAGTGGCATATTATTGTTAATGGCGAAGATATTCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCAGAACCGATTTTGAACATGTTGAAAACCAAGGGGATTGTGCAGCCAACACCTATTCAGGTGCAAGGTCTTCCTGTTATCTTATCAGGGCGTGATATGATTGGTATTGCTTTCACAGGATCTGGAAAAACTTTGGTCTTTGTGCTTCCGATGATCATGATGGCGTTGCAGGAGGAGATTATGATGCCTATAGTTCCCGGGGAAGGTCCATTTGGTTTGATTATTTGTCCATCGAGGGAACTTGCTAGGCAAACTTATGAAGTCATTGAACAATTCTTGTTACCTTTGAAGGAAGCTGGTTATCCAGAGCTTAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGAGATCGCAGCTTGACATTGTGAAAAGGGGGGTTCATTTAGTTGTTGCGACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGATATTTAACATTAGACGAGGCTGATCGATTGGTAGATTTAGGATTTGAAGATGATAttagagaagtttttgatcacttcaaagctcagaggcagactctgttattttctgctactatgccgacaaaaattcagaACTTTGCTAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGACGTGCTGGTGCGGCAAATCTTGACGTTATTCAGGAGGTAGAGTATGTCAAGCAAGAAGCGAAAATAGTTTACCTCCTCGAGTGCCTACAGAAAACTCCACCTCCTGTTCTGATATTTTGCGAGAACAAGGCTGATGTGGATGACATTCACGAGTATCTTCTCTTGAAAGGAGTGGAAGCTGTAGCTATTCATGGTGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCTTTTAAAGCTGGAAAGAAAGATGTGTTGGTTGCAACCGACGTTGCATCCAAAGGTTTGGATTTTCCCGATATTCAGCATGTCATCAACTATGACATGCCGGCTGAAATTGAAAATTATGTCCATAGGATTGGACGGACGGGAAGATGTGGCAAAACTGGTATCGCGACAACGTTTATAAACAAGAACCAAAGTGAGACAACATTGCTTGATTTGAAACACCTCTTGCAAGAAGCAAAACAAAGGATCCCTCCAGTTTTGGCTGAGCTGAATGATCCAATGGAAGATAATGAAGAAATCACAGGCATTAGTGGTGTCAGGGGATGTGCGTTTTGTGGCGGGCTTGGTCATCGTATCAGTGATTGTCCCAAATTAGAACATCAAAAGAGTGTGACAATTGCAAACAATAGAAAGGATTATTTTGGTTCTGGAGGATACAGAGGGGAAATTTGA 1536 0.3945 MIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSKKDCDLIQKQWHIIVNGEDIPPPIKNFKDMRFPEPILNMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMALQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKEAGYPELRPLLCIGGVDMRSQLDIVKRGVHLVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNEEITGISGVRGCAFCGGLGHRISDCPKLEHQKSVTIANNRKDYFGSGGYRGEI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01018 511 Coils Coil 423 443 - -
Car04g01018 511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 292 452 IPR001650 -
Car04g01018 511 Pfam Helicase conserved C-terminal domain 305 412 IPR001650 -
Car04g01018 511 CDD DEADc_DDX41 77 282 IPR044113 GO:0000398|GO:0003724|GO:0005524
Car04g01018 511 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Car04g01018 511 Pfam DEAD/DEAH box helicase 90 269 IPR011545 GO:0003676|GO:0005524
Car04g01018 511 ProSiteProfiles Zinc finger CCHC-type profile. 470 485 IPR001878 GO:0003676|GO:0008270
Car04g01018 511 SMART helicmild6 331 412 IPR001650 -
Car04g01018 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 427 IPR027417 -
Car04g01018 511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 281 IPR014001 -
Car04g01018 511 SMART ultradead3 85 296 IPR014001 -
Car04g01018 511 Gene3D - 291 453 IPR027417 -
Car04g01018 511 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 9 491 - -
Car04g01018 511 Gene3D - 34 285 IPR027417 -
Car04g01018 511 PANTHER BNAA06G38640D PROTEIN 9 491 - -
Car04g01018 511 CDD SF2_C_DEAD 293 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01018 Car-Chr4 10318225 10319760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01018 64 451 Eukaryotic Initiation Factors Gene Family AT3G19760 31.298 6.55e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01018 K13116 - gmx:100814127 995.727