Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00992 ATGTTTGTAGTCATGGATTCCATCGAAAAAACCTCTGAAAAGTGCTTAGATTCTCAACTATGGCACGCGTGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTCTATTTTCCACAAGGCCACGCAGAACACGCTCAAGGAAAAGTAGATTTTTCCAAAACGCGCGTTCCACCACTCATCCCTTGCAGAATCTCTGCTATGAAATACATGGCAGACCCTGAAACAGATGAAGTCTATGTCAAAATCAAACTAACCCCTTTAAGAGAACACCACGAATTAGATTCAGAAGATGATTGTTTCTTTGGAAGAAACACTTCCTTAGAGCCTCAAGAAAAACCAGCTTCTTTTGCAAAGACATTAACACAATCTGATGCAAACAATGGTGGTGGTTTCTCTATTGAATTCCTCGGCGAACCACCTGTTCAAACAATCATTGCTAAAGATATGCATGGAAATTGTTGGAAGTTTAGACATATTTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGTAATTTTGTGAATCATAAGAAGCTTGTTGCTGGTGATTCAATTGTCTTCTTGAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGGAGAGCTAAGAAAGGAGGAATTGGTGGTGGAACTGAATTTTCAAATTCTACTGGTTGGAACCGTGTATCACCTTTGTTTGGTGGAAATTCTGGTTTTCTGTGTGGGAATGACAACAATTTGTTGAGTAGAAAAAGTGGTTGTGATGATTTGATGGGAAGAGTGTGTTCTGAATCTGTTTTTGAGGCTGTTAATTGTGCTGTCAATGGAAGATCTTTTGAGGTTGTTTATTATCCAAGGGCTAGTACACCTGAGTTTTGTGTTAAGGTTTCTTCTGTTAAGGCTGCAATGCAAATTCAATGGTGTTCTGGAATGAGATTCAAAATGCCTTTTGAAACTGAAGATTCTTCTAGAATCAGTTGGTTCATGGGAACTATTTCTTCTGTTCAGGTTCAAGATCCAATTCGTTGGCCTGATTCCCCTTGGCGCCTACTTCAGGTGGTGTGGGATGAACCAGATTTACTTCAAAATGTAAAATGTGTAAACCCTTGGTTAGTTGAACTAGTCTCAAACATGCCAACCTTCAATGTCTCACCATTCTCACCACCAAGAAAGAAAGCAAGGTTTATCCAAGACCCATATTTTCACCTCATAAACCAACTTCCAATGCCACAATCATCATCACTCTCCAATAATCTTCTCAATTACAGCAACAACTCTCTCTGTAACAACACTAATTATAGTTCTACAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACCAAATTCATCTGATTACCCCTTCAACAAGCTACAACATGACATGTTTCTTAGTGCAAGGATTGATCAACAACATCATCACCATGCAGGTCAACCTATTAGGCCACCTTGTGGGACCTACAAGAGTAGCAATAACAACAACACTAAGAACAATGTTGACTTATCTTGCTTGTTGACTGTAGGAAATTCTAGTCAAAGTTTTAAGGAATCCAATGAAGCAAAAGCACCCCAACACCATATTTTGTTATTTGGTAAACTCATTCATACTGAACAGAAGAGTTCAAATTCAAAGAGTGGTTCTGTTAGTACTAATGGGAATAGTGTATCTGAAGGAACAAAAACATCAAATGCTTCTTCTTCTTCTGATCATCATATTCTTGGTTTTGATTTGCATCAGAATAGTCAAGTTGAAAATTCCTCTGATGGAGGTTCTCCTTGGTACAAGGATCAACATAAGCCTGATCTTGTTGGAACAGAAAATGTTACCACTTTGTGTATGGCTTCATAA 1848 0.3891 MFVVMDSIEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAQGKVDFSKTRVPPLIPCRISAMKYMADPETDEVYVKIKLTPLREHHELDSEDDCFFGRNTSLEPQEKPASFAKTLTQSDANNGGGFSIEFLGEPPVQTIIAKDMHGNCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTEFSNSTGWNRVSPLFGGNSGFLCGNDNNLLSRKSGCDDLMGRVCSESVFEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNVSPFSPPRKKARFIQDPYFHLINQLPMPQSSSLSNNLLNYSNNSLCNNTNYSSTSIQGARHAQFGPNSSDYPFNKLQHDMFLSARIDQQHHHHAGQPIRPPCGTYKSSNNNNTKNNVDLSCLLTVGNSSQSFKESNEAKAPQHHILLFGKLIHTEQKSSNSKSGSVSTNGNSVSEGTKTSNASSSSDHHILGFDLHQNSQVENSSDGGSPWYKDQHKPDLVGTENVTTLCMAS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00992 615 Pfam Auxin response factor 269 352 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car04g00992 615 MobiDBLite consensus disorder prediction 538 601 - -
Car04g00992 615 Gene3D - 118 210 IPR015300 -
Car04g00992 615 SUPERFAMILY DNA-binding pseudobarrel domain 116 210 IPR015300 -
Car04g00992 615 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 590 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car04g00992 615 Gene3D - 306 380 - -
Car04g00992 615 MobiDBLite consensus disorder prediction 470 492 - -
Car04g00992 615 MobiDBLite consensus disorder prediction 538 592 - -
Car04g00992 615 Pfam B3 DNA binding domain 120 209 IPR003340 GO:0003677
Car04g00992 615 SMART B3_2 120 210 IPR003340 GO:0003677
Car04g00992 615 ProSiteProfiles B3 DNA-binding domain profile. 147 210 IPR003340 GO:0003677
Car04g00992 615 PANTHER AUXIN RESPONSE FACTOR 16 7 590 - -
Car04g00992 615 CDD B3_DNA 119 208 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00992 Car-Chr4 10012494 10015164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00992 1 598 B3 DNA Binding Superfamily AT4G30080 51.033 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car04g00992 B3 1.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00992 - - mtr:MTR_1g094960 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00992 04 10012494 10015164 Car04g01863 04 20016320 20019820 ECH
Car04g01863 04 20016320 20019820 Car04g00992 04 10012494 10015164 ECH
Car04g00992 04 10012494 10015164 Car04g00992 04 10012494 10015164 ECH