Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00983 ATGATGGAGTTACCAAATGGAAATTGTAACGGTTCTTCATTGAATGTTTGCAATGGAAATGGAAATTTGAGTAACAATGACTCATTGAATTGGGGCATGGCTGCGGATTCAATGAGAGGTAGTCACCTTGATGAGGTGAAACGCATGGTGGAAGAGTACCGGAAAGCGGTTGTGCCGTTAGGTGGAAAAGGTTTAACAATATCTCAAGTGGCTGCGGTTGCTACACAGAATACCGGTGTGGCGGTTGAACTTGCCGAAGAGACACGATATGCGGTTAAGGCTTCTAGTGATTGGGTTGTTGATAGCATGAATAAAGGGACTGATAGCTATGGAGTCACCACTGGGTTTGGTGCAACCTCACACAGGAGAACAAAACAGGGTGGTGCCCTCCAAAATGAACTCATCCGATTTCTGAATGCTGGAATTTTTGGCAATGGAACAGAATCAACTCAAACATTACCTCACACAGCCACAAGAGCAGCCATGTTGGTTAGGATCAACACATTGCTTCAAGGATATTCTGGCATAAGATTTGAAATCATGGAAGCCATAGCAAAATTTCTAAACCATAACATAACACCATGTCTCCCTCTAAGAGGCACAATCACTGCATCAGGTGACTTGGTTCCATTATCATATGTTGCCGGTCTTTTAATTGGAAGACCAAACTCCAAATCTATTGGACCTAATGGACAAATTCTTAATGCTAAAGAAGCTTTTCAACTAGCTGGAATTGAAACTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTTTAGCACTTGTGAATGGTACTGCAGTTGGTTCTGGTTTGGCTTCTTTGGCTCTTTTTGAGACAAATTTACTTGTTGTTCTGTCAGAAATTTTGTCTGCAATTTTCGCTGAAGTTATGCAAGGAAAACCTGAATTTACTGATCATTTGACTCATAAATTGAAGCATCATCCTGGTCAAATTGAAGCTGCAGCTATAATGGAACATATTTTAGATGGAAGTTATTATGTTAAGGCTGCACAAAAAGTACATGACATTGATCCACTTCAGAAGCCTAAACAAGATAGGTACGCGCTTAGAACATCGCCACAGTGGCTTGGACCACAGATTGAAGTGATCAGAAATGCAACTAAGATGATTGAGAGAGAGATAAACTCTGTCAATGACAATCCGCTTATCGATGTTTCGAGGAATAAGGCGCTTCATGGAGGGAATTTCCAAGGTACACCTATTGGTGTTTCGATGGATAACACTCGTTTAGCCATCGCTTCAATTGGTAAACTCATGTTTGCTCAATTCTCTGAGCTTGTGAATGATTTTTACAACAATGGATTGCCTTCGAATCTAACAGGGAGCCGCAATCCGAGTTTGGATTATGGCTTCAAAGGTGCTGAAATTGCAATGGCATCTTATTGTTCAGAACTTCAGTACCTTGCTAATCCTGTCACCAATCATGTTCAAAGTGCTGAACAACATAACCAAGATGTTAACTCTTTAGGATTGATTTCGTCAAGAAAAACAGCTGAAGCAGTTGAAATATTGAAGCTCATGTCATCCACTTTCTTAGTAGCATTGTGCCAAGCCATTGATCTTAGGCACATTGAGGAAAACTTGAAAAGTGTTGTCAAGAACACTGTAAGTCAAGTGGCTAAGAGAGTTCTAACAGTTGGTGTAAATGGTGAGTTGCATCCATCAAGGTTCTGTGAGAAGGATTTGCTCAATGTTGTTGAACGTGAGTATGTTTTTGCTTACATTGATGACCCTTGTAGTGCTACATACCCTTTAATGCAGAAGCTGAGACATGTACTAGTTGATCATGCATTGGAAAATGGTGATAGGGAGGGTAATTCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAGCAAGAGCTCAAGACCCTTTTGCCTAAAGAAGTTGAAAGTGTTAGAGTTGATGTTGAGAATGGAAACCCTGCAGTTCCTAATAGGATCATTGAATGTAGGTCTTATCCTTTGTACAAGTTTGTCAGAGAAAATTTAGGGACGAGTTTGCTGACAGGAGAGAAAATCAGGAGTGGAATGGTGCTCCTCTACCTATATGCTAGGATTGTGATACCTTATgtgatctcgcttgtagccactcTGTTTGTAAGGAAGGCTGAGATGGCAAATTGA 2145 0.4009 MMELPNGNCNGSSLNVCNGNGNLSNNDSLNWGMAADSMRGSHLDEVKRMVEEYRKAVVPLGGKGLTISQVAAVATQNTGVAVELAEETRYAVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESTQTLPHTATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQILNAKEAFQLAGIETGFFELQPKEGLALVNGTAVGSGLASLALFETNLLVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSYYVKAAQKVHDIDPLQKPKQDRYALRTSPQWLGPQIEVIRNATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTGSRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLVALCQAIDLRHIEENLKSVVKNTVSQVAKRVLTVGVNGELHPSRFCEKDLLNVVEREYVFAYIDDPCSATYPLMQKLRHVLVDHALENGDREGNSSTSIFQKIGAFEQELKTLLPKEVESVRVDVENGNPAVPNRIIECRSYPLYKFVRENLGTSLLTGEKIRSGMVLLYLYARIVIPYVISLVATLFVRKAEMAN 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00983 714 Gene3D - 18 264 IPR024083 -
Car04g00983 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 27 682 IPR005922 GO:0005737|GO:0006559|GO:0016841
Car04g00983 714 SUPERFAMILY L-aspartase-like 27 682 IPR008948 GO:0003824
Car04g00983 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Car04g00983 714 Gene3D Fumarase/aspartase (Central domain) 265 682 - -
Car04g00983 714 PANTHER HISTIDINE AMMONIA-LYASE 18 683 IPR001106 -
Car04g00983 714 CDD PAL-HAL 63 528 IPR001106 -
Car04g00983 714 Gene3D - 531 652 IPR023144 -
Car04g00983 714 Pfam Aromatic amino acid lyase 65 539 IPR001106 -
Car04g00983 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00983 Car-Chr4 9882090 9889339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00983 27 682 Monolignol Biosynthesis Gene Families AT3G53260 81.402 0.0 1133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00983 K10775 - gmx:100818777 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00983 04 9882090 9889339 Car04g01871 04 20206282 20210091 ECH
Car03g02481 03 70615306 70619328 Car04g00983 04 9882090 9889339 ECH
Car04g01871 04 20206282 20210091 Car04g00983 04 9882090 9889339 ECH
Car04g00983 04 9882090 9889339 Car04g00983 04 9882090 9889339 ECH