Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00982 ATGGGTAATGTTGAAATCCCCAATTGGCTTGAGGGGTTGCCACTGGCACCTGAATTTCGACCTACTGACACTGAATTTTCTGACCCAATTGCTTATATTTCAAAAATTGAGAAAGAAGCTAGTAACTTTGGGATATGCAAGATTATCCCACCTTTACCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTCTTGAAGCGTCCTGAATTGGATCCAGATAACAGTTCATTAGGTGTTGGTAATTATTGGAAAACGGGTTCCGGTGATACTAGTAGTGATGGGGTATCAAGGGCTGTGTTTACCACAAGGCAGCAAGAAGTGGGACAGAGTGTGAAAAAAACCAAAGGGACAGTTCAGAAGACACTGTCATGTGTTCATAAGCAAGTATGGCAAAGTGGAGAGGTTTATACATTGGAACAGTTTGAATCTAAATCGAAGACTTTTGCGAGAAGCGTGTTGGGTGTGGTGAAAGATGTTTCTCCACTTGTTGTAGAGGCTATGTTCTGGAAGGCAGCTTCAGAGAAGCCTATATATGTCGAGTATGCCAATGACGTGCCAGGGTCTGCTTTTGGAGAATTCCAGGGTCAAAATTATCATAGTCGTAATAGGCAACGGAAAAGGACTTATTATACGAGTAGCGTAGATCGTTCTGTTTGTAAACAAACTGAAATGGGTGGTGTAAAAGATACCCTAAATAACAAGTCTTATGGCGTTTCTACCCCAAGTCATGATGACACATGTTTTGAGACATCTAAGTCAGCTATGACTATGTTAACATCCACACCAAATGAGGTGTCGCAGTCTTCTAAGGAAAAGAGTTTAGATGCCAACACTGATATGCAAGGCACTGCTGGTTGGAAGCTTTCCAATAGTCCTTGGAATTTGCAAGTTATTGCTCGGGCTTCAGGATCACTAACACGATTCATGCCGGATGATATCCCTGGTGTTACTTCACCCATGGTATACATTGGTATGTTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCACGAGCTTCACAGCTTGAATTTTCTTCACACGGGTTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGATTTTGAGGAAGTCATCCGCAAAGAGGGTTACGGTGGTGATATTGATCAATTTGATGCTTTGAAACTTTTGGGCGAGAAAACAACTCTTTTATCACCTGAGGTAGTTGTTGAATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTCGTGACTTTTCCAAGAGCGTATCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGGACTCCACAATGGCTTGGCGTAGCTAAAGAAGCTGCTGTGCGCAGAGCTACAATGAATCATCTTCCCATGCTTTCCCATCAGCAACTACTTTACTTGCTGACCATGTCTTTCATTTCAAGGGTGCCAAGAACACTATTACCTGGTGTGCGCAGCTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGTTTCAAGTAAAACAGGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTTCTATCCACTCTTCTTGGAAAAGAAGCTACTGAACAGGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGTCAGTTGCCTGATTTAGCTTCTACTTCTGGAACCTATACGGTGGACACGTCAAATGATAATATTAGTTCTGCAGATAAGAGTAGCCATTGTCTTCTTGATGAGATGAATTTGTACATGGAGAATCTGACTGATTTCGATGTTGGTTGTGATGATCTTCCATGCCACTTTCAAACTGATTCAGGAGCATTGGTTTGTGTGGGTTGTGGAATACTTGGTTTCCCATTTATGGCTGTTATACAACCAACTGAGAAATTGATAATGGAACTTCTTCATGATAATCACCGTCTAGTTGAAGATTCCTCTCTGAATTCTGTTGCCTCCCTTCATGGTGTAGTCTCAAGGGATCTTTCTGTTTCTGAACTTGCTTCAGCTAAGGATCCGCTGGATCAATCATTAAACAAGTGCAATAAATGTTGGAACATCTCCAGTAAACTTTTGAAGCCACGGATTTTCTGCTTGGACCATGCTGTTCAGGTAGTGGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCCTAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACAAAGTGCTTTTGATTATAATGAGGTTCCAATGGATATTGCATCCCCAGAAAACCTGGCTCTGATAGATCTGGCAATCGATGGTGAAGAAGTTGATGATTGTGAAGACTGGACATCTAAACTAGGTCTTAACCTTCGGTTTTGTGTCAATAATATAAATAACTCTCCAAGTAAACAAGTTCCTTTGGCACTGGCATTAGGGATGCAATTCTATGATAAGCGTCCTGGTTTGTCTTTAAATTGGCATTCAAGGAGAACTCGGTCAAAAAGGTCTAATCGTTTAGCTCAGACTAAACCTGACAGCATTCAGATAAAGAAGGATGATCAATTGCAGGGAAGAGTAGATGACTCCACTGATAAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGCTTCTCCGTAGCAAGCACAGTCCgtgaatcccatgaaaagtccaaaaatgtgtcagatgttttgagtgggaaTCATGAGAAATGTGTTTCTAAAGATGAGCTTGACACAGATAATTTCAGGGGTGATTGTGCATTGTCACGTAGCTTCGCTTCTGCTGCAATGTCTCCATTGCATCATGAAATCCAGAATGCTGAAGCTCCCACTATTATGAGCTTGAACGCTGCTAGCTCACAACTTTCAAATTCCTTTCCTGAACATATTTCAGTGATTGAAAAAGTTGGGGCAGAGATTGAGAATAAAACCATACAGGATGATATAGATGGAAAAATGGATTCAACATTTAGTCACTCTAAGGCGCATTACAATACCAATGATGATAAAGCAATAAGTGAGCATATTCCAAACGCAGACGTTTGTGAAGTTCCAAGAGAACTTCGTGCTGCTGCAGACTTCCATAATACAGTAAGCTTGGATGCTAAGATACAGCAAGAACGACAAGTTGGAAAAAGGGGCGAAAAGGAAATAATTCAGCCCACTCGTATTTCAGAAAAACAAATGTGTGAATTCACAAGAGGGGAAAATGCTGAGGTCTTGCAGGATGAAGTGATTTTAGAGTCTGCAAAGCAGTTTCAGATCCAAAATGAGAATAGAACTGATGAGGAAACTGTTTCTAATTCTGTTGCAAAAGGTGACAATGGAAGTGTAACTACATCAGAATTAGGATGTTCTGAAGTTTCAGCAGAAACCTGTCCTAAAGAAGACTCCTGTATTCAATTTAATTCAAATACAGAAGAGGAAATGGAAATCCAACCAATTAATAAAATTGATGAGGAACTTTCTGTATCATATCAGGAATGTTCTCAATCTGAGAAAGTGACATGTGTTGGAGAAAATGCAAATGGAAGCGAAGTTCATCTGTCACAAGATAATGGGGAGCTGGGAAGCTGTGAGTTGACTACAGCAGTTCCCAAATCAAATGCTGGGAAGAAAAAAAAGAGGAAAATGATGGAAGACACGGCAAAGAACCAATTCGATTGCGATGACTTTATTAGAAGTCCATGTGAGAGGCTGAGGCCAAGAACTGGGAAGATTGCCACAGGCAAAAGTGGAGGGCACATCAGCCAAAACGACGAGGAAAACCCAGTAGCTAAAAGGACACGGAGACCTCCCGAAGCTTCAGTTCCTCGCAAGGATAAAAAGGTTGTTGTTAAAAGGCCCCACAAGTGTGACCTTGATGGTTGCCGAATGAGTTTCACGACCAAAGCTGAGTTACTGATGCACAAACGTAACCTCTGCCCACATAAAGGGTGCGGTAAGAAATTCAGTTCTCACAAATATGCTAGGATTCACCAGCGCGTTCATGAGGATGACAGGCCCCTTAAATGCTCATGGAAAGGTTGTTCCATGTCATTCAAATGGGCATGGGCAAGGACAGAGCATATGCGAGTTCATACGGGGGAGAAGCCGTATCAATGTAAGGTCGAGGGATGCGGTCTTTCTTTCAGGTTTGTATCAGATTATAGCAGGCACAGGCGGAAAACAGGGCACTATGTGAAATCTTCTGCTTGA 4215 0.4109 MGNVEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELDPDNSSLGVGNYWKTGSGDTSSDGVSRAVFTTRQQEVGQSVKKTKGTVQKTLSCVHKQVWQSGEVYTLEQFESKSKTFARSVLGVVKDVSPLVVEAMFWKAASEKPIYVEYANDVPGSAFGEFQGQNYHSRNRQRKRTYYTSSVDRSVCKQTEMGGVKDTLNNKSYGVSTPSHDDTCFETSKSAMTMLTSTPNEVSQSSKEKSLDANTDMQGTAGWKLSNSPWNLQVIARASGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYAVPGDYAFDFEEVIRKEGYGGDIDQFDALKLLGEKTTLLSPEVVVESGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGVAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFQVKQAFIEDMLQENKLLSTLLGKEATEQVVLWNADLLPDSGKYRQLPDLASTSGTYTVDTSNDNISSADKSSHCLLDEMNLYMENLTDFDVGCDDLPCHFQTDSGALVCVGCGILGFPFMAVIQPTEKLIMELLHDNHRLVEDSSLNSVASLHGVVSRDLSVSELASAKDPLDQSLNKCNKCWNISSKLLKPRIFCLDHAVQVVEMLQSKGGANVLIICHSDYPKIKAHARAVAEEIQSAFDYNEVPMDIASPENLALIDLAIDGEEVDDCEDWTSKLGLNLRFCVNNINNSPSKQVPLALALGMQFYDKRPGLSLNWHSRRTRSKRSNRLAQTKPDSIQIKKDDQLQGRVDDSTDKKKLIQYSRRKFKSKQSCFSVASTVRESHEKSKNVSDVLSGNHEKCVSKDELDTDNFRGDCALSRSFASAAMSPLHHEIQNAEAPTIMSLNAASSQLSNSFPEHISVIEKVGAEIENKTIQDDIDGKMDSTFSHSKAHYNTNDDKAISEHIPNADVCEVPRELRAAADFHNTVSLDAKIQQERQVGKRGEKEIIQPTRISEKQMCEFTRGENAEVLQDEVILESAKQFQIQNENRTDEETVSNSVAKGDNGSVTTSELGCSEVSAETCPKEDSCIQFNSNTEEEMEIQPINKIDEELSVSYQECSQSEKVTCVGENANGSEVHLSQDNGELGSCELTTAVPKSNAGKKKKRKMMEDTAKNQFDCDDFIRSPCERLRPRTGKIATGKSGGHISQNDEENPVAKRTRRPPEASVPRKDKKVVVKRPHKCDLDGCRMSFTTKAELLMHKRNLCPHKGCGKKFSSHKYARIHQRVHEDDRPLKCSWKGCSMSFKWAWARTEHMRVHTGEKPYQCKVEGCGLSFRFVSDYSRHRRKTGHYVKSSA 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00982 1404 Gene3D Cupin 9 464 - -
Car04g00982 1404 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Car04g00982 1404 MobiDBLite consensus disorder prediction 1097 1118 - -
Car04g00982 1404 MobiDBLite consensus disorder prediction 1260 1280 - -
Car04g00982 1404 ProSiteProfiles Zinc finger C2H2 type domain profile. 1312 1341 IPR013087 -
Car04g00982 1404 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Car04g00982 1404 SMART JmjN_1 15 55 IPR003349 -
Car04g00982 1404 MobiDBLite consensus disorder prediction 1243 1280 - -
Car04g00982 1404 SUPERFAMILY beta-beta-alpha zinc fingers 1352 1395 IPR036236 -
Car04g00982 1404 ProSitePatterns Zinc finger C2H2 type domain signature. 1344 1366 IPR013087 -
Car04g00982 1404 Gene3D Classic Zinc Finger 1311 1396 - -
Car04g00982 1404 SMART cupin_9 291 460 IPR003347 -
Car04g00982 1404 ProSiteProfiles Zinc finger C2H2 type domain profile. 1342 1371 IPR013087 -
Car04g00982 1404 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1393 - -
Car04g00982 1404 ProSitePatterns Zinc finger C2H2 type domain signature. 1374 1398 IPR013087 -
Car04g00982 1404 SUPERFAMILY beta-beta-alpha zinc fingers 1313 1349 IPR036236 -
Car04g00982 1404 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1393 - -
Car04g00982 1404 ProSitePatterns Zinc finger C2H2 type domain signature. 1314 1336 IPR013087 -
Car04g00982 1404 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Car04g00982 1404 ProSiteProfiles Zinc finger C2H2 type domain profile. 1372 1403 IPR013087 -
Car04g00982 1404 SMART c2h2final6 1342 1366 IPR013087 -
Car04g00982 1404 SMART c2h2final6 1372 1398 IPR013087 -
Car04g00982 1404 SMART c2h2final6 1289 1311 IPR013087 -
Car04g00982 1404 SMART c2h2final6 1312 1336 IPR013087 -
Car04g00982 1404 Pfam jmjN domain 17 50 IPR003349 -
Car04g00982 1404 SUPERFAMILY Clavaminate synthase-like 292 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00982 Car-Chr4 9861363 9869976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00982 1 1400 C2H2 Transcription Factor Family AT5G04240 46.409 0.0 1152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g00982 JmjC 1.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00982 - - adu:107467970 1699.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00982 04 9861363 9869976 Car04g00982 04 9861363 9869976 ECH