Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00978 ATGTGTAGTTGGAGGCTGTTTCTTTGGTTAGTGTTGACATTGAGCTTGTTCCTTGGGAAGAAGATGCAATGTCAAGAAATGAATGACTATGACCAACTCGATAACCCTGCTGTTCTTCCTCTTATTACTCAGCTTGTTTATACTAAAATTTCCAATTTGACTTCACTTATTAGTCATCAAATTAGCACTGACTCCAATTTCTGTGTCAAAGATCCGGATGCTGATTGGAATCAAGCCTTTAATTTTTCATCAGATTTGGGCTTCTTGGCTTCTTGCATTAAAAAGACTAAAGGAGATATTGCGAATCGCTTGTGTACAGCCGCAGAAGTGAAGTTTTACTTAAATAGTTTAATGGAGAAATCTACAAGTGCCAATTATTTAAAGCCGAACAAGAACTGTAATTTAACCTCATGGGTGCCTGGTTGTGAGCCTGGATGGGCATGTAGTGTTCGCTCAGGCCAGAAGATCGACATTAAAGATTCAAAGGAAATGCCTGCAAGAACTTCAAACTGTCAAGCATGCTGTGAAGGCTTCTTTTGTCCTCACGGTATCACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCCCTTGCTACACTCAATAAAACAACTGGCGTATGTGAACCATATCTTtatcaattacctccaatgcagccaaaccatacctgtggaggagcaaatgtttgGGCTGATTTTAGTAGCAGTAGTGAAACATTTTGCTCAGCAGGATCCTATTGTCCAACAACCACGAAAGAAATTCCTTGCAGTAGTGGGCATTACTGTCGGATCGGTTCCACATCTGAGAAAAGATGTTTCAAGCTGAGTTCATGTAATTCAAACACAGCAACACAAAACATGCATGCATATGGAGTTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAGTGGCGAAATCAAGAGAAGCAGCAGCTAGAAGTGCAAGGAAAACCGCAAATGCACACCAAAGATGGAAATTTGCAAAAGATGCTGCTAAGAAGGGTGCATCTGGACTGCAAGCTCAATTATCACGCAAATTCTCTCGTAAGAAGGACGAAGAAAATCTTGAAAAAGTTAAAATTTTGAACCAAGAGACTTCTGAAACAGACGTCGAACTCTCGCCGCATTCACGGTCTGTGACTTCAAACATGGCTGCAAGTTCGTCTGCCGTGCCAATGGAAAAGGGGAAAAGTCCAAGTGGCCTAATGCAGATGATACATGAAATTGAAAATGACCCTAGTGTTAACAACAGTCCTGCTACAGAATTAGAAACTAGATATAAAAATGCTGCAAAGGAAAAACAGCCACATACTAATACACAAATTTTTACGTATGCGTATGCTCAGCTTGAAAAAGAGAAGGCTCAGCAACAAGAAAACAAGAACCTTACCTTCTCAGGAGTACTAAAAATGGCAACAGATACCGAGAAAAAAAGTAAGAGGCCTTTTATCGAGATTTCTTTCAAAGATCTGACTCTCACGCTGAAAGCTCAAAACAAACATATACTGAGAAATGTTACCGGGAAAATCAAACCTGGTCGTATCACTGCTGTCATGGGTCCATCAGGGGCTGGCAAGACAACATTTCTATCGGCTCTAGCTGGAAAGGCATTTGGATGCTTGGTTACTGGTTCAATTCTTATAAATGGAAGGAATGAATCAATTCATTCCTTTAAGAAAATTATTGGCTTTGTGCCACAAGATGATGTGGTTCATGGAAATCTTACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCAGCTGATTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTCAATTCTTGGGGCTTCAATCTGTGCGGAATTCCTTAGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGCCAAAGGAAGCGAGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATGTTAGACGAACCGACGTCTGGCCTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTAAGACGTGAAGCTCTCGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCGAGCTATGCTTTGTTCAAAATGTTTGATGACTTGATACTTCTGGGTAAAGGTGGTCTCATGGTCTATCATGGATCTGCCAAGAAAGTTGAAGAATACTTTTCAGGTATAGGGATCAATGTTCCGGAGCGGATTAACCCTCCAGATCACTTTATTGACATTTTGGAGGGTATAGCAGCACCGGGTGGAAGTTCAGGACTTAGTTATGAAGATCTTCCAGTTAAATGGATGCTGCATAATGGATATCCAATACCTCTCGATATGCGGCAGAATGCAGCACAGTTTGATATGCCTCAGAGTGTAAATTCAGCTAATGACATAGAATCCAATCACTTAGGTGAAGCGGGAAAAACGTTTGCTGGAGAATTATGGCATGATGTGAGAAACAACGTGGAACTCCGAGGGGAAAAAATTAGACTTAATTTTTTGAAATCCAAGGATTTATCTAACCGGAAAACGCCTGGTGTATTCAAGCAATATAAGTATTTTCTCATACGAGTTGGGAAGCAGCGATTACGAGAAGCTAGGATCCAGGCCGTAGATTATCTTATTTTGTTACTTGCTGGAGCCTGTTTAGGATCAATTACCAAATCGAGTGATCAAACTTTTGGCGCAGTTGGTTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCGGCGTTGAGATCATTTTCTCTAGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTTTTTTCTCTCCAAAGACACAATGGATCATTTCAATACAGTGATCAAGCCTGTGGTGTACCTATCTATGTTCTATTTCTTAACCAATCCAAGATCAACTTTTGCGGATAACTATGTTGTGCTTCTTTGTCTTGTATACTGTGTGACTGGCATAGCATATGCATTGTCCATAGTTTTCGAACCCGGCGCAGCCCAGCTGTGGTCGGTACTTCTTCCTGTTGTTTTGACTCTCATTGCAACACAACCAAAAGACAGTAAAATTTTGAAGGCTATAGCTAATTTATGTTACCCTAAATGGGCTTTACAAGCATTAGTCATTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTCATAACTCGTTGCGGTTCACTTTTAAAAAGTGGCTATAATCTTCATGATTGGAGTCTTTGCATTTCCATCCTCATTGTTATGGGTGTAATTGGCCGTGCAATAGCATTTTTCTGTATGGTCACCTTCAAAAAGAAGTAA 3330 0.4027 MCSWRLFLWLVLTLSLFLGKKMQCQEMNDYDQLDNPAVLPLITQLVYTKISNLTSLISHQISTDSNFCVKDPDADWNQAFNFSSDLGFLASCIKKTKGDIANRLCTAAEVKFYLNSLMEKSTSANYLKPNKNCNLTSWVPGCEPGWACSVRSGQKIDIKDSKEMPARTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGVCEPYLYQLPPMQPNHTCGGANVWADFSSSSETFCSAGSYCPTTTKEIPCSSGHYCRIGSTSEKRCFKLSSCNSNTATQNMHAYGVMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANAHQRWKFAKDAAKKGASGLQAQLSRKFSRKKDEENLEKVKILNQETSETDVELSPHSRSVTSNMAASSSAVPMEKGKSPSGLMQMIHEIENDPSVNNSPATELETRYKNAAKEKQPHTNTQIFTYAYAQLEKEKAQQQENKNLTFSGVLKMATDTEKKSKRPFIEISFKDLTLTLKAQNKHILRNVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVTGSILINGRNESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIQFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLMVYHGSAKKVEEYFSGIGINVPERINPPDHFIDILEGIAAPGGSSGLSYEDLPVKWMLHNGYPIPLDMRQNAAQFDMPQSVNSANDIESNHLGEAGKTFAGELWHDVRNNVELRGEKIRLNFLKSKDLSNRKTPGVFKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSDQTFGAVGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAFFLSKDTMDHFNTVIKPVVYLSMFYFLTNPRSTFADNYVVLLCLVYCVTGIAYALSIVFEPGAAQLWSVLLPVVLTLIATQPKDSKILKAIANLCYPKWALQALVIANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILIVMGVIGRAIAFFCMVTFKKK 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00978 1109 SMART AAA_5 528 720 IPR003593 -
Car04g00978 1109 ProSitePatterns ABC transporters family signature. 643 657 IPR017871 GO:0005524
Car04g00978 1109 Gene3D - 500 737 IPR027417 -
Car04g00978 1109 MobiDBLite consensus disorder prediction 382 415 - -
Car04g00978 1109 Pfam ABC transporter 519 671 IPR003439 GO:0005524
Car04g00978 1109 MobiDBLite consensus disorder prediction 382 405 - -
Car04g00978 1109 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 33 1106 - -
Car04g00978 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 735 IPR027417 -
Car04g00978 1109 Pfam ABC-2 type transporter 700 1109 IPR043926 GO:0140359
Car04g00978 1109 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 744 IPR003439 GO:0005524
Car04g00978 1109 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 33 1106 - -
Car04g00978 1109 CDD ABCG_EPDR 500 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00978 Car-Chr4 9842636 9849995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00978 518 721 Calmodulin-binding Proteins AT2G36910 26.457 5.51e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00978 - - gmx:100798807 1880.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00978 04 9842636 9849995 Car04g01876 04 20288088 20307104 ECH
Car03g02485 03 70666044 70672914 Car04g00978 04 9842636 9849995 ECH
Car04g01876 04 20288088 20307104 Car04g00978 04 9842636 9849995 ECH
Car04g00978 04 9842636 9849995 Car04g00978 04 9842636 9849995 ECH