Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00972 ATGGGTGGTAGCGAGAACTCGAAGGCTATGGTTGTGAATCGTCTGGCTGATTCCATCAGAGATATTTCTGGGTTACCTGAATGTCAAAACGTTTGCAAGAGGATGTATGGGAATTTGATTCGCAGGGTGAAGCTTTTAAGCCCTTTGTTTGAGGAATTGAAAGACTCTGATGAATCCCTTTGTGATCAACAGCTTCAAGCTTTTGAATCTCTAAGGGTTGCTTTGGATTTGGCTATCACCCTTCTAAAGTCTGTGAATCAAGGGAGTAAGCTTTATCAGGCTTTGCGGAGGAATGAAATAGCAGATAAGTTCCAACAAATAACTGAAAAAATTGAAGCTGCATTGAGTGAAATTTCATACAACAAACTTCAGATATCAGAGGAAGTTCAAGAACAGATTGAACTGGTGCATGCTCAGTTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATTTACAACTAGAATTGGATATAGCAGTAGCACAGAAAGAAAAAGACCCTGATCCTGCTATACTCAAAAGACTTTCTGAGAAGTTGCATCTGAGGACTATCAATGATCTAAAGAAAGAGTCTAGTGAATTGCATGAATTAGTCATAACAAGCGATGGAGAACTCGGGGACAGTTTTGAAACGGTCTCGTCCCTTCTTAGGAAACTGAAAGACTGCGTGCTCACTGAAAATCCAGAGGTTGATACCTATGAGAGCGAGAAATTGTCAATTAGGCACCGGTCTCCTGTAATCCCAGACGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCTACCGGTCAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCCAAGACACAGCAGACACTTTTGCATACAGCTCTTACTCCAAACTATGTTTTGAAGAGTCTGATTGGTTTATGGTGCGAAAGCAATGGTGTTGAACTTCCAAAGAAGCAAGGTAACTGTAGAACAAAGAAATCCGGAAGCAGTCATTCAGATTGTGACAGAACTGCTATCAAAGCTTTATTGGATAAACTTACAAGTAATGATATCGAACAGCAAAGAGCGGCTGCTGGTGAGCTCCGGTTGTTGGCCAAGAGGAATGCAGATAATCGAGTATGTATTGCTGAGGCAGGAGCAATACCGCTTCTCGTCGAGCTGCTGTCCTCTGCAGACCCTCGAACTCAGGAACACGCTGTTACAGCGCTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAAGTATAGTAAATGCAGGAGCTATACCGGATATCGTAGACGTACTGAAAAATGGCAGCATGGAGGCTAGAGAAAACGCAGCTGCGACTCTCTTTAGTTTATCCGTTCTAGACGAGAACAAAGTTGCAATAGGTGCAGCAGGAGCTATCCCGGCTCTTATAAAGTTACTTTGTGAAGGTACTCCAAGAGGCAAAAAAGATGCAGCTACTGCTATATTTAATCTATGTATTTATCAGGGAAACAAAGCTAGAGCTGTAAAAGCCGGGATAGTTGTTTCGCTGATACGGTTTATGAAGGATGCAGGGGGAGGGATGGTTGACGAAGCGCTAGCCATAATGGCAATCCTTGCAAGCCATCATGAAGGTAGGATATCAATCAGTCAGGCCGAGCCAATCCCTGTTTTGGTTGAGGTTATACGAACTGGATCACCACGCAACCGGGAGAACGCTGCTGCTGTTTTGTGGTCTGTATGCACGGGAGATCTAATGCAATTGAAACTAGCAAAGGAACATGGAGCTGAAGAAGCACTTCAGGGATTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTCTTACAGAGAATGGAAGGGGAAGATGGTTTGCAAAATTCCTAG 1893 0.4274 MGGSENSKAMVVNRLADSIRDISGLPECQNVCKRMYGNLIRRVKLLSPLFEELKDSDESLCDQQLQAFESLRVALDLAITLLKSVNQGSKLYQALRRNEIADKFQQITEKIEAALSEISYNKLQISEEVQEQIELVHAQFKRAKAQTEFADLQLELDIAVAQKEKDPDPAILKRLSEKLHLRTINDLKKESSELHELVITSDGELGDSFETVSSLLRKLKDCVLTENPEVDTYESEKLSIRHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCESNGVELPKKQGNCRTKKSGSSHSDCDRTAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSADPRTQEHAVTALLNLSINESNKGSIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVVSLIRFMKDAGGGMVDEALAIMAILASHHEGRISISQAEPIPVLVEVIRTGSPRNRENAAAVLWSVCTGDLMQLKLAKEHGAEEALQGLSENGTDRAKRKAGSILELLQRMEGEDGLQNS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00972 630 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Car04g00972 630 Gene3D - 10 125 IPR036537 GO:0007166
Car04g00972 630 CDD RING-Ubox_PUB 251 293 IPR045210 -
Car04g00972 630 Gene3D - 329 625 IPR011989 -
Car04g00972 630 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Car04g00972 630 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Car04g00972 630 PANTHER U BOX DOMAIN-CONTAINING 11 622 - -
Car04g00972 630 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Car04g00972 630 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Car04g00972 630 SUPERFAMILY RING/U-box 245 322 - -
Car04g00972 630 Coils Coil 126 162 - -
Car04g00972 630 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 11 622 - -
Car04g00972 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 320 IPR013083 -
Car04g00972 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Car04g00972 630 SMART arm_5 456 496 IPR000225 GO:0005515
Car04g00972 630 SMART arm_5 415 455 IPR000225 GO:0005515
Car04g00972 630 SMART arm_5 538 578 IPR000225 GO:0005515
Car04g00972 630 SMART arm_5 374 414 IPR000225 GO:0005515
Car04g00972 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Car04g00972 630 SUPERFAMILY ARM repeat 342 618 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00972 Car-Chr4 9746271 9750432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00972 11 623 U-box Gene Family AT3G54850 66.775 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00972 - - gmx:100777452 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00972 04 9746271 9750432 Car04g00972 04 9746271 9750432 ECH