Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00959 ATGGCAACAAATAGATTTATATGTGAGGTTTGCAATAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCTTGGAAGCTAAAACAAAAGTCTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCTGAGCCCACTTGCGTCCATCATGATCCTTCAAGGGCTTTAGGAGACCTAACTGGCATCAAAAAGCACTACTCTCGTAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCAAGGCGTGACAGTTTCATCACTCATAGAGCATTTTGTGATGCATTAGCACAAGAGAGTTCAAGACACCCTAACCCTTTTGGTACTCACTTATATGGCACAAACACAAACCACATGAGTTTAGGTCTATCCCAAGTTGGTTCTCAAATCTCCCAATTGcaaaatcaaaaccaaacatccaacactaacaacaacaTTTTGCGACTTGGATCAACACAACCAAAGTTTGAACCCTTAATCTCTCACTCTTCATTAATTGGACACTCAATTCCATCTTCACCATTCTTCATGACTGATATTCCAAATCAATCATCCTTTGAAGAACAACAATTCTCAAACAAACAACTACATGGTCTAATGCAACTTCCTGATCTTCAAGGCAACACAAATAATTCTTCCAATATTTTCAACCTCATGAATATCCATGAACATCATCAATTCAACAACAACATTAATACTAGTAACCAAGGAACAACACTTTACAATATTAACAACAACCCTCTTATAAGTGATCATCAACTCTTTGTGAATTCAATGCAACAACAAGAATCTCCTCACATGTCAGCCACTGCATTGCTTCAAAAAGCTGCTCAAATTGGTTCTACTTCAACCAACAACAAAGGTACTTCTTTACTAAGAGGAATGTGTACTACTTCTTCAACtaataatattaatgatgataatcataacattaatGCAACTTTTGGAAGAAGTTCAAGTATGGAGGAAAATGAGCATCACAACAATGAACTTCATGGATTGATAAACTCTTTTGCAAATGGGAACACATCCATATTTGGAAATGTGCAAGGGAATGATAAGTTAACTTTAGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTGGTGGATTTTCATCACAAAGTGAACAACATGGCATCAATACTACGAGTGTGGTATCTTTGAATGCTGACGTAAAATTACCACATTCGAATCAACGTTTTGGAAGTTCAAATATGATGCAATGA 1344 0.3549 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSRHPNPFGTHLYGTNTNHMSLGLSQVGSQISQLQNQNQTSNTNNNILRLGSTQPKFEPLISHSSLIGHSIPSSPFFMTDIPNQSSFEEQQFSNKQLHGLMQLPDLQGNTNNSSNIFNLMNIHEHHQFNNNINTSNQGTTLYNINNNPLISDHQLFVNSMQQQESPHMSATALLQKAAQIGSTSTNNKGTSLLRGMCTTSSTNNINDDNHNINATFGRSSSMEENEHHNNELHGLINSFANGNTSIFGNVQGNDKLTLDFLGVGGMVRNMSGGFSSQSEQHGINTTSVVSLNADVKLPHSNQRFGSSNMMQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00959 447 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 382 - -
Car04g00959 447 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 386 413 - -
Car04g00959 447 SMART c2h2final6 6 28 IPR013087 -
Car04g00959 447 SMART c2h2final6 47 77 IPR013087 -
Car04g00959 447 SMART c2h2final6 82 102 IPR013087 -
Car04g00959 447 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Car04g00959 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Car04g00959 447 Gene3D Classic Zinc Finger 2 54 - -
Car04g00959 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 382 - -
Car04g00959 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 386 413 - -
Car04g00959 447 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Car04g00959 447 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Car04g00959 447 Gene3D Classic Zinc Finger 60 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00959 Car-Chr4 9612579 9617301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00959 1 441 C2H2 Transcription Factor Family AT2G02080 47.589 6.66e-124 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g00959 zf-C2H2_jaz 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00959 K25870 - gmx:100795090 497.278