Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00942 ATGATACAAGAAGATCAAGGACAGTGTTCTTCTCAAGCAATCAACAACAACTTTGAAACATATCATCAAGAACAGTTTCTCCTTCAACAACAACAACAGATGAGACAACAAAACAGTCATGATCATCATCATATCTATGGTGGAGGAAGATCATCATCATTGAATAATATGTTCCATGGTCATGAAGTTTCACCAATCTTACAACCATGGTCTATGcaacaacttcataatcatcatcatcatcaAACTTTCAACCATGATAATCCATTTCTTATCCCTcaacaacaacaacaacaacaaTCTTCTTCACCTTATGCAAGTTTGTTCAACAGAAGGGTTATCAATCCTTCTTCACTTCAATTTGCATATGATAATAATCCATCTTCTGAACATCTTAGGATAATATCAGATACAGTGCTAAATGGTTCAGGTGTACCGTTTGGTCTTCAAGGTGAAATTGGAAAGATGAGTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCTGCATCAAAGAGTCATAGTGAAGCTGAAAGGAGACGTAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGCAGCTTGTTGCCAAGCACAACCAAAACAGACAAAGCATCATTGCTAGCAGAAGTGATTGAACATGTAAAAGAACTAAAGCGACAAACGTCATTAATAGCAGAAACATGTCCAGTTCCAACTGAATGCGATGAGTTAACAGTAGATGCAGCTGATCAAGAACATGGAAATGGAAAATTTGTAATCAAAGCCTCACTTTGCTGTGATGATAGATCAGATCTTTTGCCTGAACTCATTAAGACATTGAAAGCATTAAGGTTAAGAACATTGAAAGCTGATATTACAACACTTGGAGGACGTGTTAAGAATGTGTTGTTCATCACtggtgaagatgatgatgatcatgatgaATATTCAAATAACAGTGAAGAACATGGCCACCAGAATTTGCAGTATTGCATTACTTCAATACAAGAAGCTTTCAGAGGAGTCATGGAGAAGAGTCTTGCTGATGATTCTGCTTCTGGAAATGTCAAGAGACAAAGGACTAATATTATATCAATATCTAATTAA 1086 0.3398 MIQEDQGQCSSQAINNNFETYHQEQFLLQQQQQMRQQNSHDHHHIYGGGRSSSLNNMFHGHEVSPILQPWSMQQLHNHHHHQTFNHDNPFLIPQQQQQQQSSSPYASLFNRRVINPSSLQFAYDNNPSSEHLRIISDTVLNGSGVPFGLQGEIGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETCPVPTECDELTVDAADQEHGNGKFVIKASLCCDDRSDLLPELIKTLKALRLRTLKADITTLGGRVKNVLFITGEDDDDHDEYSNNSEEHGHQNLQYCITSIQEAFRGVMEKSLADDSASGNVKRQRTNIISISN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00942 361 PANTHER TRANSCRIPTION FACTOR BHLH30 76 359 IPR045847 GO:0003700|GO:0006355
Car04g00942 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 224 IPR036638 GO:0046983
Car04g00942 361 Coils Coil 359 361 - -
Car04g00942 361 CDD bHLH_AtAIG1_like 163 241 - -
Car04g00942 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Car04g00942 361 Pfam Helix-loop-helix DNA-binding domain 171 217 IPR011598 GO:0046983
Car04g00942 361 PANTHER TRANSCRIPTION FACTOR BHLH30 76 359 - -
Car04g00942 361 SMART finulus 174 223 IPR011598 GO:0046983
Car04g00942 361 CDD ACT_UUR-ACR-like 256 308 - -
Car04g00942 361 Gene3D - 163 223 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00942 Car-Chr4 9401939 9405015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00942 105 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 60.662 3.09e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g00942 HLH 5.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00942 - - pvu:PHAVU_007G101900g 389.423