Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00941 ATGCTGGTTCGAAGGAGAGTGATTAGTTGGAGAAGGGTAGCTAAGTCCCTTCAAGCTATGCTTGCTCATACCTTTCTTTTCTCCTTCACCCTTCTTCTTGTTCTCAAGCTTGACCGTTTCTTCCTTTTTTCATGGTGGACTGTGTTTTTTCCTCTTTGGCTTTTCCATGTGGTGGTAGCACGAGGTAGGTTTTCGTTGCCTGCTCCCTCAACGCCTCATGGTCGCCAATGGGCTCCTTGTCATTCAGTCATAGCAACACCATTGCTTGTGGCATTTGAGCTTCTTCTATGTATACATCTTGGGAGCAGTTATGTGGTGAATTTAAAGATTGTCTTCATACCTCTTATAACTTTCGAATTGATGATTTTGATCGATAACATCAGGATGTGTAGAGCTTTAATTCCTGGAGATGATGAAAATATGACTGATGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCGATAGCCATGGTTTTCTTTATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGCGATGTTGCGGCTCTAGGCTGGTGGGACTTATTTATCAACTACGGCATTGCACAGTGCTTTGCGTTTCTCGTTTGTACAAAGTGGCACAATCCAACAATTCACGGAAACTCTCAAATTACAGAACCATGTTCATCGTCAAATACCATAAGATATCTGGAATGGAGTAGAGAAGGCATAGTTATTTCGACAGATGAAGATTGGCAGCAAAATGCATTTTGCACTCTGCAGGACATAGGCGGGCATATTATGAAAATTCCATTCATTGCTTTCCAAATAATACTTTTTATGCATTTAGAGGGAACACCATCGGGTGCGAAAAATATACCGAAATGGGTCATTTTTTCTCCTCTTTTTCTGTTGCAAGGAGCTGGAGTATTATTTGCAACATATAGATTAATAGAGAAGATTGTTCTTTTACTCTATAATGGAGATATTCCTAGAAACTATTCATCTATAGCATCAAAATCCCGTGACTGCTTTGGGTTTTTCCATCATGGATCAAGGTTGCTAGGTTGGTGGTCGATAGACGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAGTTCTGGGTCAGGGTACAACACTTTCTCCCCTGATACGGTGAAGAAAATGCCTAGAGCAGAACTTGTTCAGGAGATTTGGAGACTTCAAGCTGCACTTGGTGAACAAACAGAAGTTACCAAGTATAGCCAGGAGGAATTTGAAAGACTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTTGAAGAGCAGATTGATGTGGTCCTCCTTCCCTGCAAGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGCAAGAGATGCCCAATCTGCCGTGGCATCATCGAAGAACGGATGCCTGTATATGATGTGTAG 1410 0.417 MLVRRRVISWRRVAKSLQAMLAHTFLFSFTLLLVLKLDRFFLFSWWTVFFPLWLFHVVVARGRFSLPAPSTPHGRQWAPCHSVIATPLLVAFELLLCIHLGSSYVVNLKIVFIPLITFELMILIDNIRMCRALIPGDDENMTDEAVWETLPHFWISIAMVFFIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKWHNPTIHGNSQITEPCSSSNTIRYLEWSREGIVISTDEDWQQNAFCTLQDIGGHIMKIPFIAFQIILFMHLEGTPSGAKNIPKWVIFSPLFLLQGAGVLFATYRLIEKIVLLLYNGDIPRNYSSIASKSRDCFGFFHHGSRLLGWWSIDEGSREEEARLFCAGSSGSGYNTFSPDTVKKMPRAELVQEIWRLQAALGEQTEVTKYSQEEFERLQNEKILCRVCFEEQIDVVLLPCKHHILCSTCCEKCKRCPICRGIIEERMPVYDV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00941 469 ProSiteProfiles Zinc finger RING-type profile. 422 457 IPR001841 -
Car04g00941 469 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 469 - -
Car04g00941 469 SUPERFAMILY RING/U-box 413 464 - -
Car04g00941 469 Pfam Zinc finger, C3HC4 type (RING finger) 420 462 - -
Car04g00941 469 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 469 - -
Car04g00941 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 468 IPR013083 -
Car04g00941 469 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00941 Car-Chr4 9374315 9381149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00941 12 469 C3H Transcription Factor Family AT1G73950 62.876 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00941 - - gmx:113000756 818.15