Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00937 ATGGAAGGAGGTAGTTGCACAGATGAAACCGCCACAAGCAATGACTCAATTTCTGTATCTCTCATTCCGGCGAAGCTATCTCCACCGCCGCCGAGCACACTCGTTCGCCTTGGCAGCGGTGCCAGCGCCGAGAGTTGCGGCGTCTCCGGCGAGGCCGAATCTCGAAAACTCCCGTCGTCGAAACACAAAGGCGTGGTGCCACAGCCGAACGGGCGTTGGGGAGCACAGATTTACGAGAAGCATCAGCGCGTGTGGCTTGGTACCTTTAACGAAGAAGACGAAGCCGCAAGAGCCTACGATATCGCCGCCTTGAGGTTCCGCGGAAAAGACGCGGTAACGAATTTCAAGAACCTCACCGGCGCAGGTAATGATGCTGATGACGCTGAAACAGATTTTCTCAACTCGCATTCCAAATCCGAAATCGTCGACATGCTCCGGAAACACACCTACGACGATGAGCTCCGACAGAGCATGCGCGGCACGTGTGGTGGAAGGCAGCGGCGTAACGGAGAATTGGATGCTGCAGCGTCACGAGGCGCGTGTGATGCTAAAGCGCGTGAACATCTGTTCGATAAAACGGTTACGCCGAGTGACGTTGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAACACTTTCCATTAGGTGCCGGTTCTGTTTCCGTTGCAGTCTCCGTCGAAGGGATCTCGCCGTGTGTTGCGGCGGCGAAGGGTTTGCTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTATTCTTATTGGAACAGTAGCCAAAGCTACGTGTTAACAAAAGGATGGAGCCGGTTCGTTAAGGAGAAAAATCTTAGGGCCGGTGATGCGGTTCGGTTCTTCAGATCGACCGGACCGGACAGGCAGCTTTACATAGATTGCAAAGCCAGAAGCAATGGTGTCGTCGGTGTCGGTATTGGTGAAGTTAATAATAATATTTGCGATTTGTTTGTTCCGGTCCGACCGGTAGTTGAACCGGTTCAGATGGTTCGGCTTTTCGGGGTGAATCTTTTGAAACTACCTGGTTCTGATGGTGTTGGTGGTAGTTGCAATGGGAAGAGGAAAGAGATGGACCTTTTTGCCTTAGAATGCAGCAAAAAGCCAAAGATAATTGGAGCCTTATAA 1155 0.5186 MEGGSCTDETATSNDSISVSLIPAKLSPPPPSTLVRLGSGASAESCGVSGEAESRKLPSSKHKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNFKNLTGAGNDADDAETDFLNSHSKSEIVDMLRKHTYDDELRQSMRGTCGGRQRRNGELDAAASRGACDAKAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLGAGSVSVAVSVEGISPCVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSNGVVGVGIGEVNNNICDLFVPVRPVVEPVQMVRLFGVNLLKLPGSDGVGGSCNGKRKEMDLFALECSKKPKIIGAL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00937 384 ProSiteProfiles AP2/ERF domain profile. 61 116 IPR001471 GO:0003700|GO:0006355
Car04g00937 384 SMART rav1_2 61 122 IPR001471 GO:0003700|GO:0006355
Car04g00937 384 SMART B3_2 190 307 IPR003340 GO:0003677
Car04g00937 384 SUPERFAMILY DNA-binding pseudobarrel domain 187 305 IPR015300 -
Car04g00937 384 CDD B3_DNA 188 293 IPR003340 GO:0003677
Car04g00937 384 Pfam B3 DNA binding domain 190 298 IPR003340 GO:0003677
Car04g00937 384 Pfam AP2 domain 60 108 IPR001471 GO:0003700|GO:0006355
Car04g00937 384 MobiDBLite consensus disorder prediction 21 68 - -
Car04g00937 384 ProSiteProfiles B3 DNA-binding domain profile. 190 308 IPR003340 GO:0003677
Car04g00937 384 CDD AP2 60 118 IPR001471 GO:0003700|GO:0006355
Car04g00937 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 384 IPR044800 GO:0003700
Car04g00937 384 Gene3D - 179 312 IPR015300 -
Car04g00937 384 Gene3D AP2/ERF domain 61 117 IPR036955 GO:0003700|GO:0006355
Car04g00937 384 SUPERFAMILY DNA-binding domain 60 116 IPR016177 GO:0003677
Car04g00937 384 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00937 Car-Chr4 9309470 9311332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00937 5 384 B3 DNA Binding Superfamily AT1G25560 57.035 3.73e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Car04g00937 B3 1.4e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00937 K09287 - gmx:100789009 537.339