Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00936 ATGCAAAGTCATCATCATTTGAACTCATTTTCTTCCTGTTGTGGGAGTAGTGAGAGTGGGTGCAGCAGTTTAGTAGAAGATGAAGATTCCATTTTCCTTTCTCTTGCACCTCCTGGCCACCAAATACCAAAACTCTCCTCTCCCCTTCAACAAAACACTCCTACTACTATTCCTCACACACCTCAATATTGGATCCCTTCTCCTTCACAAATCCTTGTTGGTCCCACCCATTTCTCTTGCCCTGTCTGCAACAAATCCTTCAACCGTTTTAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGGAAAGGAGCTGAATCTCTAAGAGGGTCAAACTCAAAAGCAGCAGCATCTTCAATGGTGAAACTACCATGCTATTGTTGTGCTGAGGGATGCAAAAACAACATAAACTATCCAAGGTCAAAACCATTGAAGGATTTCAGAACCCTTCAGACACACTACAAGAGGAAACATGGAGGGAAATCATTCGAATGTAGGAAGTGTAGGAAAGCATTTGCAGTGAGAGGAGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTCTGTATATGTGGTTCTGATTTTAAACATAAAAGGTCTCTTAAAGATCATGTTCGTGCTTTTGGTAATGGACATGCTCCACACACTCTTGAATCTTTTACTTTTGATGCTCTCTTGCGTGATCAAAATGGAAATATTCAAGATTATGAGGAACAACAACAAGAAGAAGAAACTTAA 753 0.4064 MQSHHHLNSFSSCCGSSESGCSSLVEDEDSIFLSLAPPGHQIPKLSSPLQQNTPTTIPHTPQYWIPSPSQILVGPTHFSCPVCNKSFNRFNNMQMHMWGHGSQYRKGAESLRGSNSKAAASSMVKLPCYCCAEGCKNNINYPRSKPLKDFRTLQTHYKRKHGGKSFECRKCRKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESFTFDALLRDQNGNIQDYEEQQQEEET 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00936 250 PANTHER ZINC FINGER PROTEIN WIP6 53 247 - -
Car04g00936 250 Pfam Zinc finger, C2H2 type 78 97 IPR013087 -
Car04g00936 250 PANTHER ZINC FINGER PROTEIN WIP2 53 247 IPR043584 GO:0003700|GO:0010468
Car04g00936 250 Gene3D Classic Zinc Finger 77 100 - -
Car04g00936 250 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Car04g00936 250 SUPERFAMILY beta-beta-alpha zinc fingers 151 186 IPR036236 -
Car04g00936 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Car04g00936 250 ProSiteProfiles Post-SET domain profile. 124 140 IPR003616 -
Car04g00936 250 SUPERFAMILY beta-beta-alpha zinc fingers 53 99 IPR036236 -
Car04g00936 250 SMART c2h2final6 166 186 IPR013087 -
Car04g00936 250 SMART c2h2final6 78 100 IPR013087 -
Car04g00936 250 SMART c2h2final6 129 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00936 Car-Chr4 9301127 9301983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00936 23 222 C2H2 Transcription Factor Family AT1G13290 65.272 7.31e-105 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g00936 zf-C2H2_6 0.00025 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00936 - - mtr:MTR_1g093095 372.474