Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00929 ATGGAAATTCTGAGTATATCTGTCACATTCACCAAATCTCAAACCTTTCCCTCTCTGAAACCAAACAGACCCCAAATTCACGAACTCCCAATAAACATAAGAAGACTACCCAACAAAAACCATCATTCTAATATTTCCTCTTCTTCTTGTTCCATTTCACGTAATTGTTCATTTACTAGAATAGCAGCAACAACAAACCCTTCTTCCTTCACTCCTTCCATCTCAAAGAACCGCCACTGGATGGTGCTCATGGATAAACCTCCTCACGGGGTCAATTCCAAGGCACAACTCATTGATTATTATGTAAACACTCTACAAACAGTTCTCGGCAGTGAGAAAGATGCTCAAATGTGTCTGTATGATGCTTCTTGGGATTCACATTTCGGTTTTTGTTGTGACATTGATGAAGAGATATCCTCCAAGTTGGCCAGTTTACCCAGGGTCTTATTGGTTAGACCTGATCCGGATTTCAACTTGTTGAGAAAGGACTATAGTTTATCAAGTGGCCGACCATCAAGCTTACAAACTGATATGTTGTTCCCTGCGGGAAATTCAAAGCACTGGCTTGTTAGAATGGCTAAACCCGGTGTTCGGGTTGTTACCAAAGCTCAGATTGTTGATCATTATGCTCAAATTTTGACCAAGGTCATGGAAAATGAGAAGGATGCACAAATGTGTATATATCATGTTTCTTGGAAAACCAACTTTGGATTTTGTTGTGAACTTGATGAGGATTGTGCACATGAGCTAGCTGGTGTTCCTGGTGTCTTGTCAGTTCAGCCAGACGACAATTTCGAGTCTGAAAATAAGGACTACGAAGGTAGAAACTTGGAAAATCGTCTGAATATGCCAAATTCTTCTAAAACAAGTCAGGAAGCTTTGGTGAAAACGAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCCGCATTtgaaggctttggtgagcttgttgaagTTAAAGTTATTATGGATAATATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACAGAAGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTACCCCACCAAGATACAACACGCGCCGTGCCAGATCATCCGCTTGA 1173 0.3956 MEILSISVTFTKSQTFPSLKPNRPQIHELPINIRRLPNKNHHSNISSSSCSISRNCSFTRIAATTNPSSFTPSISKNRHWMVLMDKPPHGVNSKAQLIDYYVNTLQTVLGSEKDAQMCLYDASWDSHFGFCCDIDEEISSKLASLPRVLLVRPDPDFNLLRKDYSLSSGRPSSLQTDMLFPAGNSKHWLVRMAKPGVRVVTKAQIVDHYAQILTKVMENEKDAQMCIYHVSWKTNFGFCCELDEDCAHELAGVPGVLSVQPDDNFESENKDYEGRNLENRLNMPNSSKTSQEALVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDNISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRYNTRRARSSA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00929 390 Gene3D - 267 390 IPR012677 -
Car04g00929 390 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 36 143 IPR039206 GO:0016554
Car04g00929 390 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 117 388 IPR039206 GO:0016554
Car04g00929 390 SUPERFAMILY RNA-binding domain, RBD 287 387 IPR035979 GO:0003676
Car04g00929 390 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 117 388 - -
Car04g00929 390 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 36 143 - -
Car04g00929 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 366 IPR000504 GO:0003723
Car04g00929 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 63 159 IPR037045 -
Car04g00929 390 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 266 IPR037045 -
Car04g00929 390 SMART rrm1_1 299 372 IPR000504 GO:0003723
Car04g00929 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00929 Car-Chr4 9234020 9237441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00929 295 380 C2H2 Transcription Factor Family AT2G19380 32.558 3.08e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00929 - - gmx:100791652 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00929 04 9234020 9237441 Car04g00929 04 9234020 9237441 ECH