Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00920 ATGATTTCTTCTGGGATTAACTTGGTCATGACTGTGATTGGTTTTGCTGTTAGCACAATGTTTATTGTTTTCGTTTGCACAAGACTCGTTTGTGCTCGAATTCACATGAATGCTTCTAGAAGATCCTTTCTCGTTGCTTCCAGATCCAATCTCACCATGATGGAGCGTGGTTGTCAAGGTCTTGAACGCATAGATGTAGCTAAATTTCCAGTAAAGAAGTACAGTGACAAGTTTTTTGCTGCTGGTGAAAATTCTCAATGCACAGTCTGTCTCTCAGAGTACCAAGACAAAGATACACTGCGTATCCTCCCTCATTGTGGACACTCCTTCCATATGGCCTGCATAGACATATGGCTGCAACAGAATGCCACTTGTCCTGTTTGTCGAATATCATTGCGTGAATTTTCCGAGAGAACGCAAACAATGCAACCTGTATATAGCTCCCATTACGGGATGGAGTCCTTCGATACTCATCATTATCACTGTATGATGGATGATATTGGATTATCGTCAACAAGAATCCCCGACAACCATGGGGTGAACCCTATACAAGAGGATCACTTTCCATCTGAGGGTGGTGGAGCAGTTGATATCGACAGTATCGCCTCCTTAAGTCCGAGCGATTTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGCCCATCAAATTTATAA 675 0.4252 MISSGINLVMTVIGFAVSTMFIVFVCTRLVCARIHMNASRRSFLVASRSNLTMMERGCQGLERIDVAKFPVKKYSDKFFAAGENSQCTVCLSEYQDKDTLRILPHCGHSFHMACIDIWLQQNATCPVCRISLREFSERTQTMQPVYSSHYGMESFDTHHYHCMMDDIGLSSTRIPDNHGVNPIQEDHFPSEGGGAVDIDSIASLSPSDFIKDEGKKHVESPSNL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00920 224 Pfam Ring finger domain 86 129 IPR001841 -
Car04g00920 224 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Car04g00920 224 CDD RING-H2_PA-TM-RING 86 129 - -
Car04g00920 224 PANTHER OS11G0150450 PROTEIN 1 223 - -
Car04g00920 224 PANTHER OS11G0150450 PROTEIN 1 223 - -
Car04g00920 224 SMART ring_2 87 128 IPR001841 -
Car04g00920 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Car04g00920 224 SUPERFAMILY RING/U-box 81 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00920 Car-Chr4 9132990 9135397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00920 3 132 C3H Transcription Factor Family AT1G04360 36.111 2.05e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00920 - - aprc:113873018 381.333