Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00918 ATGAATGACCCATATGCTTTCCCGGAGGATCTCCGTCGACTCATATCATCAAGAAACCATCTAACCACCACTACACAACAACCAccgtctctgtatgcttcttcttcttcttcttcttttccttctCCATTCAATAATAATTCCTACGACCCTATCATGCAAATTGGTGATGTTTTCTACCCCCGTCCCGCTTTCACTCACCACTATGATTATTATTCTTCTTCCTCCAATACTCTCATCAACCCTATTCCTATTCCTATCCCAACTACAACACCTTCTTCTGCATTTGCCGCCTTACAAACCAATTCTTCTCATAATAACAAAACTAACTGGCTTGCTTTTGATCCTTCTAACAACAGATGGCCAAGACAAGAAACCCTTTCTCTTCTAGAAATCAGATCTCGTCTTCATTCTAAATTCAAAGACAATAATCACAAAGCGCCTTTGTGGAATGAAATCTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAAAAGTTTGAGAATTTGTACAAATATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAACACTACAGATTCTTCAGGCAACTTGAAGCAATATGTGGAGAATCAAACACTACTCATCATCATGCCTCAACTTCTGATAATACAACTCTTCATCATGCTGCAAATGCTGCTGTTGATTCTCATCAAACTCCAAGCTTCACAACTAACCAAGAAAATGTTATTAATATTGGTGATCATCAAAATTTGAATAATAACTTCAAGTACTCAGAGAGTCTCACAAGTTTCTCAAATTCATCAGAATTTGAGATAACATCATCATGTGAAAATAATGATGATGAAGATCTCTCAGCTGTTGCACACATGATGAAGCAACCAAAGGAAAAAGGGTTAGTAGAAGACCAAAGACAAAGTGATGATAAGAGGGTAAGAAAAAGTTGGAGAGTTAAAGTGGAAGAAATTGTTGATTATCACATGAGGAACATTATAGAGACTCAAGATACATGGATGGAAAAAATGTTGAGTGTGGTTGAACAAAGAGAACAAGAAATGGCATTGAAAGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTGTGATAAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCTTGGGTTGAAGCAAGAGATGCTGCATTATTAGAAGTTGTTAGAAAACATATTGGAATAGAAAATAAAGAAGCATTGGTATCAAATAAGAATAAGAGTCAAGTAAATGATACAAAATATGGATACCCTTTTGAAAATGTGGATCAAAGATGGACAGAAATGGAGATTTCAAGTTTGATACAATTAAGGACAAGTTTTGAACAGAGAGTAAGAGAAAATGGTGATTTGGATGAGGGTGTTTGGAATGAAATAGGTGAAAAAATGGTTTATATGGGATTTGATAGGAATGGAATTGAGTGTAAAAAAATATGGCATGAAATTAGTATGTCTCTTAGAAGGACAGTTGATTGTGGAGTCAAAACTAGGCCTTGGTGTTTGGGACTTAAGGTGACAGATGATGATGAAATTTGA 1566 0.3487 MNDPYAFPEDLRRLISSRNHLTTTTQQPPSLYASSSSSSFPSPFNNNSYDPIMQIGDVFYPRPAFTHHYDYYSSSSNTLINPIPIPIPTTTPSSAFAALQTNSSHNNKTNWLAFDPSNNRWPRQETLSLLEIRSRLHSKFKDNNHKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGESNTTHHHASTSDNTTLHHAANAAVDSHQTPSFTTNQENVINIGDHQNLNNNFKYSESLTSFSNSSEFEITSSCENNDDEDLSAVAHMMKQPKEKGLVEDQRQSDDKRVRKSWRVKVEEIVDYHMRNIIETQDTWMEKMLSVVEQREQEMALKEEERKRKESMRCDKEIHELWAKEKAWVEARDAALLEVVRKHIGIENKEALVSNKNKSQVNDTKYGYPFENVDQRWTEMEISSLIQLRTSFEQRVRENGDLDEGVWNEIGEKMVYMGFDRNGIECKKIWHEISMSLRRTVDCGVKTRPWCLGLKVTDDDEI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00918 521 Coils Coil 344 371 - -
Car04g00918 521 Pfam Myb/SANT-like DNA-binding domain 434 501 IPR044822 -
Car04g00918 521 Pfam Myb/SANT-like DNA-binding domain 119 206 IPR044822 -
Car04g00918 521 Gene3D - 121 183 - -
Car04g00918 521 Gene3D - 436 498 - -
Car04g00918 521 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 37 504 - -
Car04g00918 521 CDD GT1 119 185 - -
Car04g00918 521 ProSiteProfiles Myb-like domain profile. 435 493 IPR001005 -
Car04g00918 521 ProSiteProfiles Myb-like domain profile. 119 178 IPR001005 -
Car04g00918 521 PANTHER - 37 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00918 Car-Chr4 9112258 9114916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00918 120 498 Trihelix Transcription Factor Family AT5G03680 41.089 9.26e-85 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Car04g00918 Myb_DNA-bind_4 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00918 - - gmx:100787750 564.303