Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00896 ATGGCACTTAAGGCTGCTTCTGGTTCTATACCCAGTGCAGAGACAAGTAGTTCTGATGTCAAGGAGGAAAAGTCTGAGACATACAGTAATAATATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACGACTTCATCTGTCCAGATTTGATTGTCGGATCATGCCTGCAGACTCCTGAAGATGTTGATGAGCTGCGTAAAATCGGAGTCAAAACTATTTTTTGCTTGCAACAAAACTCAGACCTAGAATATTTTGGAGTTGATATCAATGCCATACGAGAATATGCCAACACATGCGATGACATTCAACACTTGCGTGCTGAGATAAGggactttgatgcatttgatttacggaagcggcttccagctgtagttagcaaattatacaaggcaaTCAAGTCCAATGGAGGTGTGACATATATTCATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCATATATGTTTTGGGTTCTGGGCTATAAACTCAATGAAGCTAATACACTACTTCTGAGCAAAAGGTCATGTTTTCCAAAACTGGATGCCATAAAGAGTGCAACAGCCGATATTCTTACAGGCCTCAATAAAAAGCCTATTACTTTGTCTTGGGAAGGTGGAAATTACTCTTTGGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAACGCGCTTAGATTTTGATGACAAACAAGGTTCATGGTTTCTCAAGAAGGAATTGTTCGAAGGGCGCTATGAGTACAAGTACATTGTTGATGGGGAATGGACAATCAATAAGGACGAACTTGTAACCTCTCCCAACAAAGACGGCCATGTCAACAATTTTATCGAAGTCCTTGATGACGCAGACGGTGATCGTGCCTTTCTTCGGGAGAGATTGACTGCTGATGATCCTGATCTCACAAAGGATGAAAGGATCAGAATAAAAGAGTTTCTGGAAACTTGTCCCGACGAGGATTTCTGA 996 0.3936 MALKAASGSIPSAETSSSDVKEEKSETYSNNMTEAMGAVLTYRHELGMNYDFICPDLIVGSCLQTPEDVDELRKIGVKTIFCLQQNSDLEYFGVDINAIREYANTCDDIQHLRAEIRDFDAFDLRKRLPAVVSKLYKAIKSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEANTLLLSKRSCFPKLDAIKSATADILTGLNKKPITLSWEGGNYSLVEISGLDIGWGQRTRLDFDDKQGSWFLKKELFEGRYEYKYIVDGEWTINKDELVTSPNKDGHVNNFIEVLDDADGDRAFLRERLTADDPDLTKDERIRIKEFLETCPDEDF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00896 331 CDD DSP_laforin-like 48 195 IPR045204 GO:0019203|GO:0046838
Car04g00896 331 Pfam Dual specificity phosphatase, catalytic domain 91 187 IPR000340 GO:0008138|GO:0016311
Car04g00896 331 Pfam Glycogen recognition site of AMP-activated protein kinase 208 291 IPR032640 -
Car04g00896 331 Gene3D Immunoglobulins 204 294 IPR013783 -
Car04g00896 331 CDD E_set_AMPKbeta_like_N 208 289 - -
Car04g00896 331 SMART dsp_5 53 199 IPR020422 GO:0006470|GO:0008138
Car04g00896 331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 191 IPR029021 -
Car04g00896 331 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 329 - -
Car04g00896 331 MobiDBLite consensus disorder prediction 1 28 - -
Car04g00896 331 SUPERFAMILY E set domains 206 290 IPR014756 -
Car04g00896 331 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 126 184 IPR000387 GO:0016311|GO:0016791
Car04g00896 331 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 2 329 IPR030079 GO:0005982|GO:0007623|GO:0019203
Car04g00896 331 Gene3D Protein tyrosine phosphatase superfamily 42 322 IPR029021 -
Car04g00896 331 ProSiteProfiles Dual specificity protein phosphatase domain profile. 49 206 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00896 Car-Chr4 8773571 8781416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00896 48 330 Protein tyrosine phosphatase (PTP) family AT3G52180 67.138 2.61e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00896 - - mtr:MTR_1g090867 588.571