Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00893 ATGGCATTACAGTCTTTGTCTTTCGTGACCTTGCTGGCATATGGTTCACTGATAACTCTTGTCGCATTGACGCCGTGCTGGTATGTCATGGTCACCCATATGGAGAAACGCGCAAATTTGAACTCACAAAATATTGTATCCCATTTGCAATCAGAAATTGAGTACTCAGCTGACCTTTTGCACCCAATGAAATCATCATCAACAAATTTAGCTAGATTGTTGAATTCACCCCTTGATTCTTCTACTAACATATCTTTCTCTGATATTAAAACCAAGATAGCTCCATTACTATTTCAAGCATTTGTGACTGTTCCTCACTTAACTCAAATCTCATACATAGGAATGGAAGGTTTCTTTTTCTCATACTCTAGTGATCATAATCAAACACTAGCAATGTACTCTAACTCATCATCTATGTCTTCTAATGGAATTGCCTCAAATAAAACCTTATACTATATCCAGCCTGTGAATAATGAAACTGGAGAGGTTTTTGGAGAAGCCATAATATCAAACTCCTCTATTAATACAAGTTGGATTAAGAGAGCAGCTAATCTTTCAGATGGATTTGTCTCATTAGGAACCAAATGGAACAATGGCAGTGATATTTTGTTCCTCAGTTATGCTAGAGTCACAAAAGTAGGAGTGATCTCTCTAGGACTTTCAGCAAAAGCAATAACTGATTTTGTTACTCGTGTCGACCGTTTAGGCACAAGCTCGTATTTGGCTACCAAAGATGGAAAAATTCTTGTGGAAGGGATTCAACATATCAATTTGATTATTTCTAATGATTCAGTTAACTTACAATCAGTGAATGCAAATGGAGATTTCATAAAGAATGAGGGCACTGTCTCATGCAAGGATGAAGCTATTGCTACTAGTTTGAATATTCAAGATATTAAATATCTAATCCAATGCTACCCCATTGATATAATGGGAATCGAATCGGTGTATGTTTTGGCTGTCCCAAGAAATGGATTTGATGTAAGTTATAAGAAAAAGGGATTGGCTCTGTTGAATGTAATGATGGTAATGATACTTGTTGCTGTCTTTGCTTTTCTATTTATAGATTCTAGAGCCATAAGGAGAGAAATGCATTTGTGTGCTTCACTCATCAAACAAAAGGAGGCTACACACCAAGCTGAGAAAAAAAATATGAACAAGAGCCTTGCTGTTGCTAGTGCCAGCCACGACGTTCGCGCTTCGCTCGCAGGCATTATTGCTCTCATCAAACTTTCCTCTAAGTTAGTTGTCCCTGGTTCGGAATTGTCATCCAATTTAATCCAAATGGAGGATTGTACACAAGACTTTCTAGGACTATTGAACTCTATTCTTGACACAAGCAAAATTGAGGTAGGAAAAATGCTACTCAATGAAGAAGAATTTGATCTATCCCATCTGCTAGAAGAAGTGGTTGATATATATCATCTTGTGTCTATGGAGAAAGGTGTAGATCTTATACTGGACCCTTGTAACGGTTCTATCATAAAATATTCGCAGGTGAAAGGTGACAAGCAAAGACTTAAACAAGTTTTGTGTAATTTGTTGAGCAATGCTGTCAAATTTACAAAAGAAGGTCACATAACGGTTCGGGTTTGGGCTCAGAAGCCGACATTAAGTAACTCTATAATCAAGACTAACCAACATAGTATCACGAAACATTTGTCATGCTTATTTTCTAAGAAAAATGAACCAGAGGAGGACCTAGAAAAAACCATGAACTCGGTCAAACAGGAACTGCATTCTATGGATTTTGTTTTTGAAGTGGATGATACAGGAAAAGGTATTCCCAAAGAGAATTACAAGTCTGTGTTTGAGAATTATGTTCAAGTCAAAGAAACTGATCCTGTCCAAGAAGGAACTGGCTTGGGACTTGGAATTGTGCAGTCATTGGTACGTTTGATGCATGGAGATATTGGAATTGTGAACAAGAACATTGGTGAAAAAGGAACATGTTTCAGATTCAATGTGCTCCTAAGTATATGTGAAGGTGAAACAGTGACAGATTTTAGCACAAGGGAAGCTCTTGAGTGTGGACCAAGTAACAGGAATCAAGCTCAAGGGAGAACCTTTCATCCTATTACTTCTGGTTCAAGCATTTGTTCCATGAGTCCCATGTTAAACATTTGCAGCTCTAGTCCTAGGCTCGAGGCTTCCCGTGTTGTTCTTTTCATCAGAAATGAGGAGCGTCGGAGGACTTGTCATAGGTTCATGAAGAGTTTAGGGATTAAAGTTAAGGTTGTGAATAGCCAAGAAGATCTTTTTGATACTCTAGAGGAGATCAAACAGAAAGGCCGCCGTTCTGGTGGCCCGAGTTCTCCTGAGTCTTCCAATTTGAGTTCTTATTCTGCATCTCATAATTCATTTGCAAGAGCCAGAGGTGTTCCTTTGAGTGCTATGGATGGAACTGAGTATATATCTTCAGTGTTCAAGAAGACAAATACTGGAGCTGTACCAGGTTTCATCTTGATTGTCATTGATACAAATGCAGGACCATCATTTCCTCAACTTTGTGAAATTGTGTCAACCTTCAAGAAGGGCCTTCACAACCGTTGTAATGTTGTTTGGTTGGATAATCCACATATTCATCGTATCGATTCCAAAGCAATTGATCAAAATGACATTGTCATATCGAAACCGTTTCATGGCAGTCGCTTATTCCAAGTCATAATGCTTCTTCCTGAGTATGGTAATGTTTGGCAGCAAAACATTAAGAGAGAAACAACTCATGACAGGTCAAGTTTATCAAAACATCGGTTGTCGGACAGATCAGATTCAGAAGTATTCTCATTTGATGGAAGTCCATGTCTAAGTGTTTGGAAGGGAATTCAGAAATCTTGCATTCGAAAATCTCCGGTTCATCAAGGAGAAATATACGAAATTGGAGACTCAAGCAGTTCTAAACCTTTGCATTGCAAGAAATTTCTGGTTGTTGACGATACTAAAACTTTACGGATGTTAGCTACGAGTATACTGGTTTCGCTCGGTGCAACTGTCGAGCAATGTGAGAATGGCGAAGAAGCTGTGAGACTAGTTCATGAGGGTCTATCAAGAGATCTTCCTAACCTTCCTTATGATTACATCTTAATGGATTGCCAGATGCCAGTGATGAATGGTTTTGAGGCAACAAGGCGGATACGAGAGATGGAGAAGTCGTACGGTGTTTGCATGCCTATCATTGCATTAACTGCAGATATTGACAGTTCAACGGCGGTGACTGGAATGGACTTTCATATAGAGAAGCCCCTTAGAAAAGAGCATTTACTTGAAGCCATCAGATACTTAAACAGGAGTGACATAATGTAG 3303 0.3881 MALQSLSFVTLLAYGSLITLVALTPCWYVMVTHMEKRANLNSQNIVSHLQSEIEYSADLLHPMKSSSTNLARLLNSPLDSSTNISFSDIKTKIAPLLFQAFVTVPHLTQISYIGMEGFFFSYSSDHNQTLAMYSNSSSMSSNGIASNKTLYYIQPVNNETGEVFGEAIISNSSINTSWIKRAANLSDGFVSLGTKWNNGSDILFLSYARVTKVGVISLGLSAKAITDFVTRVDRLGTSSYLATKDGKILVEGIQHINLIISNDSVNLQSVNANGDFIKNEGTVSCKDEAIATSLNIQDIKYLIQCYPIDIMGIESVYVLAVPRNGFDVSYKKKGLALLNVMMVMILVAVFAFLFIDSRAIRREMHLCASLIKQKEATHQAEKKNMNKSLAVASASHDVRASLAGIIALIKLSSKLVVPGSELSSNLIQMEDCTQDFLGLLNSILDTSKIEVGKMLLNEEEFDLSHLLEEVVDIYHLVSMEKGVDLILDPCNGSIIKYSQVKGDKQRLKQVLCNLLSNAVKFTKEGHITVRVWAQKPTLSNSIIKTNQHSITKHLSCLFSKKNEPEEDLEKTMNSVKQELHSMDFVFEVDDTGKGIPKENYKSVFENYVQVKETDPVQEGTGLGLGIVQSLVRLMHGDIGIVNKNIGEKGTCFRFNVLLSICEGETVTDFSTREALECGPSNRNQAQGRTFHPITSGSSICSMSPMLNICSSSPRLEASRVVLFIRNEERRRTCHRFMKSLGIKVKVVNSQEDLFDTLEEIKQKGRRSGGPSSPESSNLSSYSASHNSFARARGVPLSAMDGTEYISSVFKKTNTGAVPGFILIVIDTNAGPSFPQLCEIVSTFKKGLHNRCNVVWLDNPHIHRIDSKAIDQNDIVISKPFHGSRLFQVIMLLPEYGNVWQQNIKRETTHDRSSLSKHRLSDRSDSEVFSFDGSPCLSVWKGIQKSCIRKSPVHQGEIYEIGDSSSSKPLHCKKFLVVDDTKTLRMLATSILVSLGATVEQCENGEEAVRLVHEGLSRDLPNLPYDYILMDCQMPVMNGFEATRRIREMEKSYGVCMPIIALTADIDSSTAVTGMDFHIEKPLRKEHLLEAIRYLNRSDIM 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00893 1100 SMART REC_2 972 1091 IPR001789 GO:0000160
Car04g00893 1100 SMART HisKA_10 386 452 IPR003661 GO:0000155|GO:0007165
Car04g00893 1100 PANTHER HISTIDINE KINASE CKI1-LIKE 34 1092 - -
Car04g00893 1100 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 454 IPR036097 GO:0000155|GO:0007165
Car04g00893 1100 Pfam Response regulator receiver domain 975 1091 IPR001789 GO:0000160
Car04g00893 1100 MobiDBLite consensus disorder prediction 768 782 - -
Car04g00893 1100 ProSiteProfiles Response regulatory domain profile. 973 1095 IPR001789 GO:0000160
Car04g00893 1100 CDD REC_hyHK_CKI1_RcsC-like 974 1091 - -
Car04g00893 1100 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 502 658 IPR003594 -
Car04g00893 1100 Gene3D - 355 450 - -
Car04g00893 1100 Gene3D - 954 1097 - -
Car04g00893 1100 PRINTS Bacterial sensor protein C-terminal signature 584 598 IPR004358 GO:0016310|GO:0016772
Car04g00893 1100 PRINTS Bacterial sensor protein C-terminal signature 602 612 IPR004358 GO:0016310|GO:0016772
Car04g00893 1100 PRINTS Bacterial sensor protein C-terminal signature 618 636 IPR004358 GO:0016310|GO:0016772
Car04g00893 1100 SUPERFAMILY CheY-like 973 1095 IPR011006 -
Car04g00893 1100 MobiDBLite consensus disorder prediction 760 782 - -
Car04g00893 1100 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1092 - -
Car04g00893 1100 SMART HKATPase_4 502 660 IPR003594 -
Car04g00893 1100 Gene3D - 451 663 IPR036890 -
Car04g00893 1100 ProSiteProfiles Histidine kinase domain profile. 393 660 IPR005467 -
Car04g00893 1100 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 441 655 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00893 Car-Chr4 8749137 8755625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00893 11 1084 Histidine Kinase Gene Family AT2G47430 38.618 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car04g00893 HATPase_c 4.2e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00893 - - cam:101504256 2113.58