Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00886 ATGACAGATTTTCAGCCTCTACAGCAGAAGCCTGAATCTGCTGATGCCCATGCTGAGTTTGAGCGTGGATTGGAGGATTTTATGCGCGGTCATTTGGATGATTGTATGTCATTTGCTTCGTGTAGTTCTTCCCGGGCACCAGATGATGAGGATGATGAGAGTGATCAGCTAGTTCGGAGAAGACGGAGGTCTGATCTTGAAGGGGATGATTTAGCGGAGTCATCAGCAGCACGGAGGCGCCATTCGCGGATTTTGAGCAGATGGGCTGCCCGACAGGCGCAGGAGATGATAACAACTATTGAGAGGAGGAATCGAGAATCAGAGTTGATGGCACTTGCAGGGTTACATACGGTGTCCATGTTGGACTCCTCTTTTCTGAGGGGGTCGCAGTCTCCTACCTCTGTCCAGGAGGGGACTGTGGAGAGGCCGAGCACTCAGGCATCTTCCATTCTGCAGATGTGGCGCGAATTAGAGGATGAACATTTGTTGAACCGAGCACGTGAAAGGATGAGAGAAAGGTTGAGGCAGCAAAGGAATTCTGATGCTAATACCAATGTGTCAAGTACCATGTCTGATAGTCGAGGCAGTGAGAACCGAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGATCACGGAATGCACATGGGAATCATAATGGGTCTAGCAGGGAACAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCGTTCATCTAATGTCAGTCAGAGAAATAACAATCGCAGGTCAGAGTGGCTTGGAGAAACAGAGCGTGAGAGGGTGAGAATTGTCAGGGAGTGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGTGGGAGCCGTAGGGATGCTCAAGCAAGTGAATCTGCTCAAGCTGATCAGACCCGTGATATAGCAGCCGACCGTGATGAGGGTCAGCCAGAGCATGTTCGGAGGGACATGATGAGGTTGCGTGGAAGACAAGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCATTACTCAGAGGTAGATTCCTCAGAAATGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAATTAAGACAACGACACACGGTCTCTGGTTTAAGAGATGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGAACCAATCCTGATGCCACATCAAATAGTAACATTGATGAAACAAGACGTGATGAGAACCAATCAAACAATCTGATAGATGCCCAACAAGAAAATTATGACCAAGAGCAGATTAGGAGCCCAGAAATTAATGCACGTCAGTTGCCTAATCAAACAAGAACTTTGGAAAGTAGTACAATTGAGACTATTAGTTGGCAAGAAGCTAGTCATGAAGGAGAGGATTGGCAGGAACAGATTGCCGAGAATGGGGGAGGGAACTGGCCGCAGAGAATTAATGGTCAATTAAATCAGCTCAGAGATGGAAGGGAAGCCAGTGATTGGCCACAGGAAACTCCCAGCAATTCAGGCGGGGAAGATCCTCATCCACAGGATTCTCAAAGAATTTGGCAAGATGATAACACAAGGGAAGCTGTCGGTAATTGGTCTGAAGAATCTTCTGGAGCTTCAAGGAATCGCCGCGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCCCCTGATGATGATAATGTATACAGCATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGTAGCGGTTTTCGTGAAAGTCTGGATCAACTAATTCAGTCGTATGTTGAAAGGCAAGGTCGTGCACCAATTGATTGGGATTTGCATCGTAACTTGCCAACACCAACTCCTGCTTTGCCTGAACGAGACCCTGATCAGCAAGGTGATGAACATAATGAGGGTCAGCACGAAGCCATTAACAGACCTTCCCTGGTGCTGCCTTCTCCACCTGTTCCCCCGCCACAACCACTGTGGCACCAAGATTTGCACCAAACTGGATGGTCTCCTGGTGAAAATGGATTGGCTGCTGAGACATCTGATGAGGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGTTGTGTTTGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACTTGTTCAAAATGTGCCACTGAGTTGGTTCGTGGAGGAGGTAAGTGTCCTTTGTGCCGAGCTCCGATTGTTGAGGTGGTTCGAGCATATTCCATACTGTAa 2376 0.4697 MTDFQPLQQKPESADAHAEFERGLEDFMRGHLDDCMSFASCSSSRAPDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSVQEGTVERPSTQASSILQMWRELEDEHLLNRARERMRERLRQQRNSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNAHGNHNGSSREQSPDLGEVERERVRQIVRGWMESGISDRSSNVSQRNNNRRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQASESAQADQTRDIAADRDEGQPEHVRRDMMRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGLRDGFRSRLENIVRGQAGTNPDATSNSNIDETRRDENQSNNLIDAQQENYDQEQIRSPEINARQLPNQTRTLESSTIETISWQEASHEGEDWQEQIAENGGGNWPQRINGQLNQLRDGREASDWPQETPSNSGGEDPHPQDSQRIWQDDNTREAVGNWSEESSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPALPERDPDQQGDEHNEGQHEAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSPGENGLAAETSDEGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCATELVRGGGKCPLCRAPIVEVVRAYSIL 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00886 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 720 789 IPR013083 -
Car04g00886 791 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 714 791 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 459 495 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 52 78 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 296 336 - -
Car04g00886 791 Pfam Zinc finger, C3HC4 type (RING finger) 736 783 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 434 495 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 179 237 - -
Car04g00886 791 SUPERFAMILY RING/U-box 738 784 - -
Car04g00886 791 ProSiteProfiles Zinc finger RING-type profile. 739 778 IPR001841 -
Car04g00886 791 Coils Coil 449 469 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 39 78 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 652 682 - -
Car04g00886 791 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 714 791 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 174 244 - -
Car04g00886 791 CDD mRING-HC-C3HC5_NEU1 738 778 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 296 320 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 321 336 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 1 21 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 126 147 - -
Car04g00886 791 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 714 - -
Car04g00886 791 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 714 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 544 558 - -
Car04g00886 791 MobiDBLite consensus disorder prediction 537 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00886 Car-Chr4 8683593 8689272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00886 739 785 C3H Transcription Factor Family AT3G06140 42.553 1.82e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00886 - - gmx:100805607 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00886 04 8683593 8689272 Car04g00886 04 8683593 8689272 ECH