LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g00880	ATGTCTCACTCTCTAGGCCGGCCACAAAAAGTTCAGGACAATAGAACTGACATAGAAAAAAAAATGTCAGGAGAGGAAATTTGGTCATCCGTTGAAGAAGAATCTAAGAAATCTCTGCCTCCATTTGATAACAGGAGTGGCTACAATTCAAGAACAGGAATTTATCACTCTCTTGTTAATCTTGGAACCAAGCATGAAATCCCAACAAAGCCAGACATTAACACTGCAAGTCTTGTTCTATCACAGTTTCCACAAGGAGACATTGCTGATGCAAGAATTGCATTCATTGATTTAAGTACTAATCAAAGTATAAGCTACGGCGAGGTTCGCCGATCTGTTTACTCTTTAGCATCAGCTTTGTTCCACGGACTCGAGGTTAGAAAAGGCGACGTAGTGTTCTTATTGTCTCCAAACTCAATCTTATACTCAACCATTTGCATAGCTGTGTTATCAGTTGGTGCAATTCTTACCACTGCCAACCCTCTCAATACAAAATCGGAAATCGCGAAACAAGTACATGATTCAGGCGCTAAACTAGCCATCTCCGCACCAGAAGAGTTACACAAATTGATCCCAACTGGGGTTCCTACAATTCTCACCTCAAGTCCATCTGATGGAAAATTTCTATCAGTTGAAGAGTTAATACAAGGCTGCTATGATTCAATACACTTGCCACATGTTCCTGTTATGCAATCAGACACTGCTGCTGTACTTTACTCTTCAGGGACTACAGGAGTAAGTAAAGGCGTTGTTTTGACACACTCAAACCTCATTACCATAATGAAACTCCTCTGCTGGTCTGCTGATGTGTCTGCATCTCAAGATGATGTTTTCCTGGCCTTCATTCCAATGTTCCACATATATGGACTCATGTTCTTTGGACTCGGGTTGTTGTGTGTTGGTGTTACAACAGTTTTGATGCAGAAATATGATTTCCACGCTATGCTCGTCGCTATCAAGAAGCACAAAGTTAATAACATACCAGCAGTGCCACCAGTGATCCATGCACTAGTGAAACATGCAAAAAAAGAAGGGTATGACTTGTCTAGCTTAAGAAGGGTTGGATCAGGTGCTGCACCTTTGAGTAAAGAAATGACACAAGAGTTCAGAAAGATGTTTCCTTGGATTCAACTAAGGCCAGGTTATGGACTAACAGAAAGTTGTGGTGGAGCAACGTATTTCGGGTCGGACATAGATGCTAAAGCTCATCCAGAAGCATGTGGGAAGCTGATTCCAACTTTTTGTGCAAAAGTGATAGACATTGAAACAGGGAAGCCTTTGCCTCCTCACAAGGAAGGAGAGTTGTGGCTGAAAAGTGGTACTATTATGAAAGAATATCTTGGAAATGTGGAGGCAACAAATGCGACAATCGATTCAGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATTGATGAGAATGGATTCGTCTATATAGTTGAAAGAATAAAGGAGCTAATCAAGCACAAAGGGTATCAGGTTGCTCCTGCAGAACTCGAATCGGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGGCAGATACCGATGGCGTATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGATCAAGTGATTCAATTTGTTGCAGGCCAGGTGGCTCCCTATAAGAAAGTTAGAAGGGTGAGTTTTATTGACAATATTCCAAGGTCGGCTGCTGGAAAGATATTACGTAAGGATCTTGTTTCTCAAAGCAAATACCAACTTGTTTCTAAGTTATGA	1776	0.4167	MSHSLGRPQKVQDNRTDIEKKMSGEEIWSSVEEESKKSLPPFDNRSGYNSRTGIYHSLVNLGTKHEIPTKPDINTASLVLSQFPQGDIADARIAFIDLSTNQSISYGEVRRSVYSLASALFHGLEVRKGDVVFLLSPNSILYSTICIAVLSVGAILTTANPLNTKSEIAKQVHDSGAKLAISAPEELHKLIPTGVPTILTSSPSDGKFLSVEELIQGCYDSIHLPHVPVMQSDTAAVLYSSGTTGVSKGVVLTHSNLITIMKLLCWSADVSASQDDVFLAFIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFHAMLVAIKKHKVNNIPAVPPVIHALVKHAKKEGYDLSSLRRVGSGAAPLSKEMTQEFRKMFPWIQLRPGYGLTESCGGATYFGSDIDAKAHPEACGKLIPTFCAKVIDIETGKPLPPHKEGELWLKSGTIMKEYLGNVEATNATIDSEGWLRTGDLGYIDENGFVYIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDQVIQFVAGQVAPYKKVRRVSFIDNIPRSAAGKILRKDLVSQSKYQLVSKL	591

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car04g00880	591	Pfam	AMP-binding enzyme C-terminal domain	498	573	IPR025110	-
Car04g00880	591	ProSitePatterns	Putative AMP-binding domain signature.	237	248	IPR020845	-
Car04g00880	591	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	40	590	-	-
Car04g00880	591	PANTHER	AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED	40	590	-	-
Car04g00880	591	SUPERFAMILY	Acetyl-CoA synthetase-like	90	582	-	-
Car04g00880	591	Gene3D	-	63	484	IPR042099	-
Car04g00880	591	MobiDBLite	consensus disorder prediction	1	43	-	-
Car04g00880	591	Pfam	AMP-binding enzyme	92	488	IPR000873	-
Car04g00880	591	MobiDBLite	consensus disorder prediction	10	40	-	-
Car04g00880	591	Gene3D	-	485	587	IPR045851	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g00880	Car-Chr4	8621065	8623981	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g00880	43	587	Monolignol Biosynthesis Gene Families	AT1G20500	41.982	5.67e-150	441

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g00880	K10526		-	gmx:100783104	941.414

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g01894	04	20642405	20645538	Car04g00880	04	8621065	8623981	ECH
	Car04g00880	04	8621065	8623981	Car04g00880	04	8621065	8623981	ECH

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