Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00880 ATGTCTCACTCTCTAGGCCGGCCACAAAAAGTTCAGGACAATAGAACTGACATAGAAAAAAAAATGTCAGGAGAGGAAATTTGGTCATCCGTTGAAGAAGAATCTAAGAAATCTCTGCCTCCATTTGATAACAGGAGTGGCTACAATTCAAGAACAGGAATTTATCACTCTCTTGTTAATCTTGGAACCAAGCATGAAATCCCAACAAAGCCAGACATTAACACTGCAAGTCTTGTTCTATCACAGTTTCCACAAGGAGACATTGCTGATGCAAGAATTGCATTCATTGATTTAAGTACTAATCAAAGTATAAGCTACGGCGAGGTTCGCCGATCTGTTTACTCTTTAGCATCAGCTTTGTTCCACGGACTCGAGGTTAGAAAAGGCGACGTAGTGTTCTTATTGTCTCCAAACTCAATCTTATACTCAACCATTTGCATAGCTGTGTTATCAGTTGGTGCAATTCTTACCACTGCCAACCCTCTCAATACAAAATCGGAAATCGCGAAACAAGTACATGATTCAGGCGCTAAACTAGCCATCTCCGCACCAGAAGAGTTACACAAATTGATCCCAACTGGGGTTCCTACAATTCTCACCTCAAGTCCATCTGATGGAAAATTTCTATCAGTTGAAGAGTTAATACAAGGCTGCTATGATTCAATACACTTGCCACATGTTCCTGTTATGCAATCAGACACTGCTGCTGTACTTTACTCTTCAGGGACTACAGGAGTAAGTAAAGGCGTTGTTTTGACACACTCAAACCTCATTACCATAATGAAACTCCTCTGCTGGTCTGCTGATGTGTCTGCATCTCAAGATGATGTTTTCCTGGCCTTCATTCCAATGTTCCACATATATGGACTCATGTTCTTTGGACTCGGGTTGTTGTGTGTTGGTGTTACAACAGTTTTGATGCAGAAATATGATTTCCACGCTATGCTCGTCGCTATCAAGAAGCACAAAGTTAATAACATACCAGCAGTGCCACCAGTGATCCATGCACTAGTGAAACATGCAAAAAAAGAAGGGTATGACTTGTCTAGCTTAAGAAGGGTTGGATCAGGTGCTGCACCTTTGAGTAAAGAAATGACACAAGAGTTCAGAAAGATGTTTCCTTGGATTCAACTAAGGCCAGGTTATGGACTAACAGAAAGTTGTGGTGGAGCAACGTATTTCGGGTCGGACATAGATGCTAAAGCTCATCCAGAAGCATGTGGGAAGCTGATTCCAACTTTTTGTGCAAAAGTGATAGACATTGAAACAGGGAAGCCTTTGCCTCCTCACAAGGAAGGAGAGTTGTGGCTGAAAAGTGGTACTATTATGAAAGAATATCTTGGAAATGTGGAGGCAACAAATGCGACAATCGATTCAGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATTGATGAGAATGGATTCGTCTATATAGTTGAAAGAATAAAGGAGCTAATCAAGCACAAAGGGTATCAGGTTGCTCCTGCAGAACTCGAATCGGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGGCAGATACCGATGGCGTATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGATCAAGTGATTCAATTTGTTGCAGGCCAGGTGGCTCCCTATAAGAAAGTTAGAAGGGTGAGTTTTATTGACAATATTCCAAGGTCGGCTGCTGGAAAGATATTACGTAAGGATCTTGTTTCTCAAAGCAAATACCAACTTGTTTCTAAGTTATGA 1776 0.4167 MSHSLGRPQKVQDNRTDIEKKMSGEEIWSSVEEESKKSLPPFDNRSGYNSRTGIYHSLVNLGTKHEIPTKPDINTASLVLSQFPQGDIADARIAFIDLSTNQSISYGEVRRSVYSLASALFHGLEVRKGDVVFLLSPNSILYSTICIAVLSVGAILTTANPLNTKSEIAKQVHDSGAKLAISAPEELHKLIPTGVPTILTSSPSDGKFLSVEELIQGCYDSIHLPHVPVMQSDTAAVLYSSGTTGVSKGVVLTHSNLITIMKLLCWSADVSASQDDVFLAFIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFHAMLVAIKKHKVNNIPAVPPVIHALVKHAKKEGYDLSSLRRVGSGAAPLSKEMTQEFRKMFPWIQLRPGYGLTESCGGATYFGSDIDAKAHPEACGKLIPTFCAKVIDIETGKPLPPHKEGELWLKSGTIMKEYLGNVEATNATIDSEGWLRTGDLGYIDENGFVYIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDQVIQFVAGQVAPYKKVRRVSFIDNIPRSAAGKILRKDLVSQSKYQLVSKL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00880 591 Pfam AMP-binding enzyme C-terminal domain 498 573 IPR025110 -
Car04g00880 591 ProSitePatterns Putative AMP-binding domain signature. 237 248 IPR020845 -
Car04g00880 591 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 40 590 - -
Car04g00880 591 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 40 590 - -
Car04g00880 591 SUPERFAMILY Acetyl-CoA synthetase-like 90 582 - -
Car04g00880 591 Gene3D - 63 484 IPR042099 -
Car04g00880 591 MobiDBLite consensus disorder prediction 1 43 - -
Car04g00880 591 Pfam AMP-binding enzyme 92 488 IPR000873 -
Car04g00880 591 MobiDBLite consensus disorder prediction 10 40 - -
Car04g00880 591 Gene3D - 485 587 IPR045851 -
Car04g00880 591 CDD 4CL 67 579 - -
Car04g00880 591 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00880 Car-Chr4 8621065 8623981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00880 43 587 Monolignol Biosynthesis Gene Families AT1G20500 41.982 5.67e-150 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00880 K10526 - gmx:100783104 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01894 04 20642405 20645538 Car04g00880 04 8621065 8623981 ECH
Car04g00880 04 8621065 8623981 Car04g00880 04 8621065 8623981 ECH