Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00878 ATGGCTGTTTACAACTCACCTGGATTCCGATTCCACCCTACCGATGAAGAACTCGTTTGTTTCTACCTGAAGCGCAAGCTCGCAAGAAATTTACCATCCTGTTTTGACCATCTCGCTGTCATCGATATCTACAAGTTCGAGCCATGGGACCTTCCCAGTTTGTCGAAGCTGAAAACTAAGGATTTGGAATGGTACTTTTTCACTGTGCTTGACAAGAAGTACGGTCATGGTATAAGGACGAATCGTGCTACCGATAGAGGTTACTGGAAGACTACTGGAAAAGATCGCATTGTCAAAAACGGAGAGGACACTGTTGGAATGAAGAAGACTCTTGTTTATCACTCGGGGCGGGCCCCACATGGTGATAGAACAAATTGGGTGATGCATGAATACAGGATGATTGATGAGGAGTTGGCCAAAGCTGGATTGCAGAAGGATACTTATGTGGCGTGTAGGATCTTCGAGAAGAGTGGTTCGGGGCCTAAGAATGGGGAGAAGTATGGGGCTCCCTTTGTGGAGGCGGAATGGGAGGGTGTTGATAATCGGGTGGATCCCTTGCCGGCTGTTGATAATGAGCCTTTGAAACAAATAGTTCCATCTGTGCCGGCTATTGATAATGAGCTTTTGAAACAAATAGTGCCTGTTCCTGCTGCTAGCGGTGATGATTATGTTGAAGCTGATGACCTCAAGCAGGAGCTTGAAACTAGTGTCACAGTTGGAAGCGCTGATCCTCCATCAAACTTCTACTATGGGGAGTGTAGTAGCCATCCTCAGCTTTCCCAAACATTTGTTAATGATCATATGCAATTGGAAGCCAGTTTCGGTATGTATGATCCAGTGCTTGACCAGCCTGATAATATGGCTGGGCAATATGGCCAGGATACCAATTTAGTACAAGATGGAGACTATGGTGAGCTAAACCTTGGCGAGAATCCTCTGAATTTCAATTTTGCATCTGATGATCCAGATCTATATTTTGACGCCACTGGTTATCTTACGAGTTTGGGAGAGGAGTATATGGAAACCAATGATGTTGAGAATCTTGACGAGATTTCCCCCCCCGAGATAGATCCATCTGTTGCTGCAATGCTAGATGAGTACCTTAATTACCCTGCTGGGGATATTTCCAAACATATATCCTTCGATTCTCCTTTGAGTATAGGGTGTGAAAGCCCTATTGCCAACCCTGTACAGCCTTTCATTGAGCAGAATGTGGAGGACGAAGCCAATGGTAGTTCCTTGGCAAACAAACAGGTTTCTGAAGCACAGTCTAGTAATGAAGCTATCCCAACGGAGGATCCAGAGGTGTCAAGTTGGGTCTCAGGAGATACAAATCCTTTTGTAAAGCAGGCCAATAAATTGTTGGCCAGCTTACCTGCTGCACCTGCATTTGCTTCAGAGTTTCCTACAAAGGAGTTTGCTCTTAGGATACATCCTGCAGCTCAGTCTTCCAGTTCAGCTCATATAACTGCAGGTATGATCAGCATAACAGACATTACTTTTAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGTTTTAATACCATAATGTCTACTGGGTTTTCCCAAACGGATGGTAATTCGGCTACTTTGGAGCCTATTTCTGACCTGGTCTGTAGCAAAGCCGCATTTGTGTTATCACATAGTTGGGTTTTCTTGACGGGCTTCTCAGTTGTGGTTCTTTCACTGAGTTTCAAGATCGGAAGCCTCATGTATACTGGTAAATGA 1737 0.4491 MAVYNSPGFRFHPTDEELVCFYLKRKLARNLPSCFDHLAVIDIYKFEPWDLPSLSKLKTKDLEWYFFTVLDKKYGHGIRTNRATDRGYWKTTGKDRIVKNGEDTVGMKKTLVYHSGRAPHGDRTNWVMHEYRMIDEELAKAGLQKDTYVACRIFEKSGSGPKNGEKYGAPFVEAEWEGVDNRVDPLPAVDNEPLKQIVPSVPAIDNELLKQIVPVPAASGDDYVEADDLKQELETSVTVGSADPPSNFYYGECSSHPQLSQTFVNDHMQLEASFGMYDPVLDQPDNMAGQYGQDTNLVQDGDYGELNLGENPLNFNFASDDPDLYFDATGYLTSLGEEYMETNDVENLDEISPPEIDPSVAAMLDEYLNYPAGDISKHISFDSPLSIGCESPIANPVQPFIEQNVEDEANGSSLANKQVSEAQSSNEAIPTEDPEVSSWVSGDTNPFVKQANKLLASLPAAPAFASEFPTKEFALRIHPAAQSSSSAHITAGMISITDITFRGNAMDWMVGKNGGFNTIMSTGFSQTDGNSATLEPISDLVCSKAAFVLSHSWVFLTGFSVVVLSLSFKIGSLMYTGK 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00878 578 MobiDBLite consensus disorder prediction 409 439 - -
Car04g00878 578 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Car04g00878 578 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Car04g00878 578 ProSiteProfiles NAC domain profile. 5 156 IPR003441 GO:0003677|GO:0006355
Car04g00878 578 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Car04g00878 578 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 6 573 - -
Car04g00878 578 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00878 Car-Chr4 8608678 8612434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00878 6 574 NAC Transcription Factor Family AT5G04410 38.358 7.60e-112 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car04g00878 NAM 5.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00878 - - mtr:MTR_1g090723 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00878 04 8608678 8612434 Car04g00878 04 8608678 8612434 ECH