Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00877 ATGGGTCACGAAACTCTCTTACTTCCAGCCCCACCTACCACAGTTAACCCTCCACTCTCTGCTTCTTCTACTGCAGCACCACCTACCTCTCTTGCTCCTGGTTTTAGGTTTCACCCAACTGATGAAGAACTCGTTATCTATTACCTCAAACGCAAGGTTTGTGGAAAACACTTCCGATTTGATGCTATTTCCGAAGTTGACATATACAAGAGCGAACCCTGGGACCTAGCAGATAAATCAAGGTTGAAGACAAGGGACCAAGAGTGGTATTTTTTTAGTGCATTGGACAAGAAGTATGGAAATGGTGGCAGAATGAATAGGGCTACTAGTCAAGGGTACTGGAAAGCTACTGGAAACGATCGGCCGGTTAAGCATGACCTAAGGACTGTGGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGTCGAGCTCCGGATGGTAAGAGAACAAATTGGGTTATGCATGAGTACAGGCTTGTTGATGAAGAGATGGAGAGGGCTGGGTCTGGGCCCTCTCAGCCTCAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGATATGCACCCTTTGTTGAAGAAGAATGGGATGATGGATTGGCAATGGTTCCCGGGGCAGCGTCCATGAATAACGGCTCTGTTGACCGCATATTGCGTCTTGAAGGCAACGGTGGTGTTTCATGCAGTGAAGGAAGAAATAATGTTGCACAGGACTCACAATCCAACAACAATAAAGCTCCGCTTGACGTGAACAAGCTACCGATCGAAACTCAAAATCTTCTTGCTGTGTGCAAGAGGGAGAGCCAGGCCGAGTATCCATCACCAGAAAAAGATGATTCAAAGCATATGCATGTGGATGAGTACCCATCACCCCAAACCGATAACCCGAAGCCTTTACCTCAGATATACAAAAGGCGAAGACATAACATGAACTCCAACCATTCCAATGTTTCTGGAGATTCCTTCCCCAACAGTCAGGATCCATGCTCGTCCACAATAACCACTGCCGCGACAACACTCCCGACAACCGCGGTCACCACCACAACTACCAACACTGCACCGAAAAAACATTTTCTGTCCGCACTGGTGGAGTTTTCTCTACTGGAATCACTTGAATCGAAGGAAAACCATACCTCGGTTCCGCCAGTGGATTTTGACATGGATAGTCTTGAGACGTCCGTGCCTCCGAGTTGCGCAAAGTACATCAAACACTTGCAGAGTGAGAAGCAAAAGCTTGGTGTTGAAAAGGAGACTATGCGGTTCGAGTTGATGAGTGCTCAAGCCATGATCAACATTCTCCAGTCTCGCGTCGAAATTATCAGTAGAGAGAACGAGGAAATGAAGAGGATGATGAGAAATCCTTAG 1389 0.4651 MGHETLLLPAPPTTVNPPLSASSTAAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKHFRFDAISEVDIYKSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSQGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEEMERAGSGPSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDGLAMVPGAASMNNGSVDRILRLEGNGGVSCSEGRNNVAQDSQSNNNKAPLDVNKLPIETQNLLAVCKRESQAEYPSPEKDDSKHMHVDEYPSPQTDNPKPLPQIYKRRRHNMNSNHSNVSGDSFPNSQDPCSSTITTAATTLPTTAVTTTTTNTAPKKHFLSALVEFSLLESLESKENHTSVPPVDFDMDSLETSVPPSCAKYIKHLQSEKQKLGVEKETMRFELMSAQAMINILQSRVEIISRENEEMKRMMRNP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00877 462 MobiDBLite consensus disorder prediction 237 258 - -
Car04g00877 462 MobiDBLite consensus disorder prediction 318 337 - -
Car04g00877 462 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 23 461 - -
Car04g00877 462 Coils Coil 438 458 - -
Car04g00877 462 MobiDBLite consensus disorder prediction 320 337 - -
Car04g00877 462 MobiDBLite consensus disorder prediction 1 33 - -
Car04g00877 462 Pfam No apical meristem (NAM) protein 33 158 IPR003441 GO:0003677|GO:0006355
Car04g00877 462 MobiDBLite consensus disorder prediction 275 308 - -
Car04g00877 462 MobiDBLite consensus disorder prediction 278 296 - -
Car04g00877 462 Gene3D NAC domain 40 188 IPR036093 GO:0003677|GO:0006355
Car04g00877 462 SUPERFAMILY NAC domain 22 186 IPR036093 GO:0003677|GO:0006355
Car04g00877 462 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 23 461 - -
Car04g00877 462 MobiDBLite consensus disorder prediction 237 256 - -
Car04g00877 462 ProSiteProfiles NAC domain profile. 31 185 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00877 Car-Chr4 8590434 8594908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00877 1 457 NAC Transcription Factor Family AT3G10480 43.303 2.64e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car04g00877 NAM 9.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00877 - - gmx:100808783 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00877 04 8590434 8594908 Car04g00877 04 8590434 8594908 ECH