Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00875 ATGACTAGGAGGAAGGTGAAACTTGCCTTTATCACCGATGACACAGCAAGAAAAGCAAGCTACAATAAAAGAAAAAAGGGTTTCATAAAAAAGGTGAATGAACTCACAACACTTTGTGGTATTCCAGCTTGTGCTATAATTTCAAGTCCATTTGATACTCAACCAGAGGTTTGGCCAAATCCAGAGGGAGCAAGGAAAGTGATTGAGAGATATCAAAATTCATCAGTCATAGATGAAACCAGAAATGTTAATCAAGAGACTTTCATCATGCAAAGAATTGCTAAAGCTCGTGACCAGCTCAGAAAACAGAAGCATGACAATCGTGAGCAAGAGTTGAACCTTCTTATGTTTGGTTTTATGCAAAGCAACATTCTCTCTGATGACTTGACTGCTGAAGAACTTAAAGATTTTGATAAACTTATTGAGAAGAAGATGAGGGAGGTTGATAATAAATTTGCTACACTTGATTAA 471 0.3673 MTRRKVKLAFITDDTARKASYNKRKKGFIKKVNELTTLCGIPACAIISSPFDTQPEVWPNPEGARKVIERYQNSSVIDETRNVNQETFIMQRIAKARDQLRKQKHDNREQELNLLMFGFMQSNILSDDLTAEELKDFDKLIEKKMREVDNKFATLD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00875 156 Coils Coil 93 113 - -
Car04g00875 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car04g00875 156 PANTHER MADS BOX PROTEIN 2 153 - -
Car04g00875 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Car04g00875 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car04g00875 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car04g00875 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Car04g00875 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car04g00875 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car04g00875 156 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Car04g00875 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00875 Car-Chr4 8572263 8572733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00875 1 155 Type I MADS-box Gene Family AT5G48670 46.154 1.67e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car04g00875 SRF-TF 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00875 - - gmx:100792290 203.371