Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00873 atGGAAACACCCCCTGaacaacaacaacaacaacaacaacaaGTTTCTTTAGGCTCTAAAGAACACACAAATATCATAAAAGGAAAAAGAACCAAAAGGGTAAGACCACAATCTCCTATTCCTTTCTCAATCACAGCAAATTCATCAACTGCAGAGGGAGATGGAGAAAGAGAAGATTTTTACAATGGTGATGATGTTGTcaacaacaacaacaacaacaacaaTACCTCTCCAACAACTTCTTATGTAACAGGATTAATACAAGAGAGTAGTATGATTGATGAAGAACATGACATGGCAAATTGTTTGATCCTATTAGCACAAGGACAATCAAGGGAATTATCATCACCAAAAAACACAACAACTGAGGAAGATGGTGGAATGAACTACACAAAATACAGCAGTAGAAAATTCATGGAAGCTGCTAGTTTGGATTCAGGAAGAGCAGGTTACTATGTTTATGAATGCAAAACATGTAACAGAACATTCCCTTCATTTCAAGCACTTGGTGGACACAGAGCAAGTCATAAAAAGCCTAAAGCTTTGCCAATTGCTCAAGACAGAAAGCAACCATTTTTTGATGATGAAGAATTTCAATTCAAAACCAACAATAATCATAAATCAATTTCTCTTCAATTCAATAAGGGAAATGTGAATAACAACAATAAGTCTAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCTCTTGGTGGTCATATGAGGCGTCACCGCGCTCCCGTTGGGACTTCTTCTGCAAACACCACACTTTCATTGACACCAATGTCTTTGGTTCATGAAGATCATGCTAGAAAGAGAAGAAATGTTTTGTCTTTGGATTTGGATCTTAATCTTCCTGCACCTGAAGATGATCAAAGAGAATCGAAGTTTGCCTTCGGAaacaagcaacagcaacaacaacaacaacaccagcagcaacaacaacaacaacagcaacaaAGTCTTGTCTTTTCTGCACCAGCTTTGGTGGATTGTCATTACTGA 1020 0.3382 METPPEQQQQQQQQVSLGSKEHTNIIKGKRTKRVRPQSPIPFSITANSSTAEGDGEREDFYNGDDVVNNNNNNNNTSPTTSYVTGLIQESSMIDEEHDMANCLILLAQGQSRELSSPKNTTTEEDGGMNYTKYSSRKFMEAASLDSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALPIAQDRKQPFFDDEEFQFKTNNNHKSISLQFNKGNVNNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTSSANTTLSLTPMSLVHEDHARKRRNVLSLDLDLNLPAPEDDQRESKFAFGNKQQQQQQQHQQQQQQQQQQSLVFSAPALVDCHY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00873 339 MobiDBLite consensus disorder prediction 303 325 - -
Car04g00873 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 249 IPR013087 -
Car04g00873 339 PANTHER ZINC FINGER PROTEIN ZAT5 19 339 - -
Car04g00873 339 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Car04g00873 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Car04g00873 339 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Car04g00873 339 SUPERFAMILY beta-beta-alpha zinc fingers 153 249 IPR036236 -
Car04g00873 339 SMART c2h2final6 227 249 IPR013087 -
Car04g00873 339 SMART c2h2final6 154 176 IPR013087 -
Car04g00873 339 MobiDBLite consensus disorder prediction 1 21 - -
Car04g00873 339 MobiDBLite consensus disorder prediction 1 59 - -
Car04g00873 339 Gene3D Classic Zinc Finger 152 249 - -
Car04g00873 339 MobiDBLite consensus disorder prediction 289 325 - -
Car04g00873 339 Pfam C2H2-type zinc finger 226 252 - -
Car04g00873 339 Pfam C2H2-type zinc finger 153 179 - -
Car04g00873 339 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 19 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00873 Car-Chr4 8550974 8552120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00873 18 339 C2H2 Transcription Factor Family AT5G04390 46.322 4.88e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g00873 zf-C2H2_6 7.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00873 - - lja:Lj5g3v1698900.1 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00873 04 8550974 8552120 Car04g01913 04 21022203 21023321 ECH
Car04g01913 04 21022203 21023321 Car04g00873 04 8550974 8552120 ECH
Car04g00873 04 8550974 8552120 Car04g00873 04 8550974 8552120 ECH