Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00854 ATGGAAACAAACTGGCAAGACAGCCTGCAATTTAGAACTGGCAGCTACAACAGCAACTCTAACAGAACCTTAATCTTCATGGATACAAATACTGAAGTGAATATTGAAGTATCTGAGGAAGAACAAGATACCATTTTGAATAGTTATCCCATGTTGTTGTATTCTCAAGCCAAGCTTCATAAACCTGATTCAACATCACTCCATTGCTCAATTTGTTTAGCAGATTATAAAGATTCAGAGTGGTTGCGCCTCTTACCTGATTGTGGTCACTTTTTTCATAAGGATTGTATTGGCACTTGGTTTAGGCTAAATTTCTCATGTCCCATGTGTAGGAACTCGCCACTTCCAACACCACTTGCTGAAGTTACTCCCTTGGCCACTACACATAATTGA 393 0.3919 METNWQDSLQFRTGSYNSNSNRTLIFMDTNTEVNIEVSEEEQDTILNSYPMLLYSQAKLHKPDSTSLHCSICLADYKDSEWLRLLPDCGHFFHKDCIGTWFRLNFSCPMCRNSPLPTPLAEVTPLATTHN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00854 130 Pfam Ring finger domain 68 111 IPR001841 -
Car04g00854 130 SUPERFAMILY RING/U-box 46 114 - -
Car04g00854 130 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 18 121 - -
Car04g00854 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 115 IPR013083 -
Car04g00854 130 SMART ring_2 69 110 IPR001841 -
Car04g00854 130 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 121 IPR045899 -
Car04g00854 130 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00854 Car-Chr4 8389898 8391247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00854 41 128 C3H Transcription Factor Family AT2G35910 56.522 3.78e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00854 - - mtr:MTR_1g090460 175.637