Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00853 ATGAACCACAATGAAAAAGGCGAATTCGATGCAAATGGGTTCACATACATCTTAACATTTGTATCGGGTCTCGTATTTTTGATTTTCATACTAGTTTTTGTTTGTGTTCGACTTCGCATGTCGCAGAATTCCAACGTGTTTAATACTTTTTCTGGTTTTCCATCACATCGTCAAGAAGACTTAATCATCGAACAAGGACATCACCATCATACGAACACAAGTTTTGAAGGATATCCGAAATTGTTATACTCTCAAATTCAAAAGAATATTAAAGGTGGTTCTTCAAATTCTAGTTGTTCTATTTGCTTAGGAGATTACAAAGAAAATGATGTGTTGAGGTTACTTCATGATTGTGGTCATCTTTATCATGTTGCTTGTGTTGATCCATGGCTAAGGTTACATTCTACTTGTCCAATATGTCGATCAAAATCATCCCTATAG 441 0.3492 MNHNEKGEFDANGFTYILTFVSGLVFLIFILVFVCVRLRMSQNSNVFNTFSGFPSHRQEDLIIEQGHHHHTNTSFEGYPKLLYSQIQKNIKGGSSNSSCSICLGDYKENDVLRLLHDCGHLYHVACVDPWLRLHSTCPICRSKSSL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00853 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 145 IPR013083 -
Car04g00853 146 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 143 IPR045899 -
Car04g00853 146 Pfam Ring finger domain 98 141 IPR001841 -
Car04g00853 146 SMART ring_2 99 140 IPR001841 -
Car04g00853 146 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 143 - -
Car04g00853 146 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Car04g00853 146 CDD RING-H2_PA-TM-RING 99 141 - -
Car04g00853 146 SUPERFAMILY RING/U-box 98 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00853 Car-Chr4 8386425 8387171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00853 71 142 C3H Transcription Factor Family AT5G06490 52.000 9.37e-24 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00853 - - gmx:102663718 151.369